View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15148_low_27 (Length: 276)
Name: NF15148_low_27
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 10420845 - 10421124
Alignment:
| Q |
1 |
gcatgcaaacgtataaaaaatccatatgtattacgtgtaggtttggaaaatgtaaaacccacacgaacacctagctggaaatgctacaaatgtatatatt |
100 |
Q |
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| T |
10420845 |
gcatgcaaacgtataaaaaatccatatgtattacgtgtaggtttggaaaatgtaaaacccacacgaacacctagctggaaatgctacaaatgtatatatt |
10420944 |
T |
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| Q |
101 |
atatgtacccaaaaaggttacgttagttctcatggtgtagttcaagtggttgaactgagacatctagaaaaatctgcataataactttaacttttgaatt |
200 |
Q |
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| T |
10420945 |
atatgtaccaaaaaaggttacgttagttctcatggcgtagttcaagtggttgaactgagacatctagaaaaatctgcataataactttaacttttgaatt |
10421044 |
T |
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| Q |
201 |
gaaactt------------tataagttccggtatgtcattatgatgttgggaccattggagttgaagactggtctgtgct |
268 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10421045 |
gaaactttcattacaaatgtataagttccggtatgtcattatgatgttgggaccattggagttgaagactggtctgtgct |
10421124 |
T |
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