View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15148_low_28 (Length: 270)
Name: NF15148_low_28
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 39299461 - 39299206
Alignment:
| Q |
11 |
attcatatcaatgtattgagaagaataaagttactttactttgcaagtgaataatagctacataatatagactcctatttataatatgac--------gg |
102 |
Q |
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| T |
39299461 |
attcatatcaatgtattgagaagaataaagttacttt-----gcaagtgaataatagctacataatatagactcctatttataatatgacattatgacgg |
39299367 |
T |
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| Q |
103 |
tgtaaaatatatttacaccatatcaattaaatcttatttttaaatgcaaaacaataagtacaagaaattggcatgtaatagaacatggaaaagtgtagga |
202 |
Q |
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| T |
39299366 |
tgtaaaatatatttacaccatatcaattaaatcttatttttaaatgcaaaacaataagttcaagaaattggcatgtaatagaacatggaaaagtgtagga |
39299267 |
T |
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| Q |
203 |
gtgaaagaaactgtgtgataggtggccagagaatattacagttgaatgaaaagggcctttg |
263 |
Q |
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| T |
39299266 |
gtgaaagaaattgtgtgataggtggccagagaatattacagttgaatgaaaagggcctttg |
39299206 |
T |
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Back To:
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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 26878964 - 26878877
Alignment:
| Q |
176 |
tgtaatagaacatggaaaagtgtaggagtgaaagaaactgtgtgataggtggccagagaatattacagttgaatgaaaagggcctttg |
263 |
Q |
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| T |
26878964 |
tgtaatagaacatggaaaagtgtaggagtgaagcaaattgtgttataggtggtcgtagaatattacagttgaatgaaaagggcctttg |
26878877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 26879364 - 26879328
Alignment:
| Q |
61 |
ataatagctacataatatagactcctatttataatat |
97 |
Q |
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| T |
26879364 |
ataataactacataatatagactcctatttagaatat |
26879328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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