View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15148_low_29 (Length: 269)
Name: NF15148_low_29
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 173 - 261
Target Start/End: Original strand, 25867709 - 25867797
Alignment:
| Q |
173 |
taactgtggtaaaatataattaaattattttatgcctttgttatataaagacataaaacaggtgtgactcttcattcactattttcttc |
261 |
Q |
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| T |
25867709 |
taactatggtaaaatataattaaattattttatgcctttgttatataaagacataaaacaggtgtgactcttcattcactattttcttc |
25867797 |
T |
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Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 25867538 - 25867632
Alignment:
| Q |
1 |
ctgtaaatccaaaatgaacaaaattaagaaaagagccgtttattttgaattccacccattttcggtttagtacaatgtatccaaaattcaataaga |
96 |
Q |
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| T |
25867538 |
ctgtaaatccaaaatgaacaaaagtaagaaaagagccgtttattttgcattcc-cccattttcggtttagtacaatgtatccaaaattcaataaga |
25867632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 25868400 - 25868311
Alignment:
| Q |
172 |
ctaactgtggtaaaatataattaaattattttatgcctttgttatataaagacataaaacaggtgtgactcttcattcactattttcttc |
261 |
Q |
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| T |
25868400 |
ctaactatggtaaactataattaaattattttatgcctttgttatataaagacataaaaaatgtgtgactcttcattcaccattttcttc |
25868311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 25868571 - 25868477
Alignment:
| Q |
4 |
taaatccaaaatgaacaaaattaagaaaa-gagccgtttattttgaattccacccattt-tcggtttagtacaatgtatccaaaattcaataaga |
96 |
Q |
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| T |
25868571 |
taaatccaaaatgaacaaaaataaaaaaaagagccgtttattttgcattccccccatttatcggtttggtacaatgtatccaaaattcaataaga |
25868477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 2922955 - 2922866
Alignment:
| Q |
172 |
ctaactgtggtaaaatataattaaattattttatgcctttgttatataaagacataaaacaggtgtgactcttcattcactattttcttc |
261 |
Q |
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| T |
2922955 |
ctaactatggtaaaatataattaaattatcttattactttgttatataaagacataaaaaaggtgtgactcttcattcaccattttcttc |
2922866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 2923135 - 2923048
Alignment:
| Q |
4 |
taaatccaaaatgaacaaaattaagaaaagagccgtttattttgaattccacccattttcggtttagtacaatgtatccaaaattcaataa |
94 |
Q |
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| T |
2923135 |
taaatcgaaaatgaacaaaaataa---aagagccgtttattttgcatttccccatttttgggtttagtagaatgtatccaaaattcaataa |
2923048 |
T |
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