View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15148_low_3 (Length: 643)
Name: NF15148_low_3
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Original strand, 6440028 - 6440652
Alignment:
| Q |
1 |
aagagcaattggaaccaaaaatatataggatagtagtggttgtaagttctgtgtaaaaggaaataacataaattttaattcttcatttagaacgatcact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6440028 |
aagagcaattggaaccaaaaatatataggatagtagtggttgtaagttctgtgtaaaaggaaataacataaattttaattcttcatttagaacgatcact |
6440127 |
T |
|
| Q |
101 |
tccagatgatttcaggctaacgaaatatgccagaacatgtactttctaaaaaagatccaaattcatattattgctaattcatatttcactgatgtgataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6440128 |
tccagatgatttcaggctaacgaaatatgccagaacatgtactttctaaaaaagatccaaattcatattattgctaattcatatttcactgatgtgataa |
6440227 |
T |
|
| Q |
201 |
gatagaagcatatgttgctagattttttcttttccaccacgattaagctaggcaatgattgtatactatgtttatactttctggtttatgtaggcactga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6440228 |
gatagaagcatatgttgctagattttttcttttccaccacgattaagctaggcaatgattgtatactatgtttatactttctggtttatgtaggcactga |
6440327 |
T |
|
| Q |
301 |
ttttatagtttgtttgtagtttgagtagcagcacaagcctggaaactgttcagcttgacaagaatcaattatcaggtacaattccttatgaagttgggaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6440328 |
ttttatagtttgtttgtagtttgagtagcagcacaagcctggaaactgttcagcttgacaagaatcaattatcaggtacaattccttatgaagttgggaa |
6440427 |
T |
|
| Q |
401 |
atagaaggtaaaataccagattcaatgtctgctttgatacaatgtgaaattcattatcgttaacctcaatgagttcattgtcacattcctcgttccaaca |
500 |
Q |
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| T |
6440428 |
atagaaggtaaaataccagattcaatgtctgctttgatacaatgtgaaattcattatcgttaaccacaatgagttcattgtcacattcctcgttccaaca |
6440527 |
T |
|
| Q |
501 |
tttggtcatctcactccttcaatgtagcaagtattgaacactatggtaatgtgcccttcgaagatatttgatttttggtttgaaattgggttttaaaagt |
600 |
Q |
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| T |
6440528 |
tttggtcgtctcactccttcaatgtagcaagtattgaacactattgtaatgtgcccttcgaagatatttgatttttggtttggaattgggttttagaagt |
6440627 |
T |
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| Q |
601 |
aggttaattttctatagtttgtatt |
625 |
Q |
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| T |
6440628 |
aggttaattttctatagtttgtatt |
6440652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 442 - 589
Target Start/End: Complemental strand, 34765340 - 34765192
Alignment:
| Q |
442 |
atgtgaaattcattatcgttaacctcaatgagttcattgtcacattcctcgttccaacatttggtcatctcactccttcaatgtagcaagtattgaacac |
541 |
Q |
| |
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|||||||| | |||||| ||||| |||||||||||||||||||||||||||||||||| ||| || |||||||| ||||||| | ||| ||||||| |
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| T |
34765340 |
atgtgaaaattattatccgtaaccacaatgagttcattgtcacattcctcgttccaacacttgatcctctcactctttcaatgcatcaaaccttgaacat |
34765241 |
T |
|
| Q |
542 |
t-atggtaatgtgcccttcgaagatatttgatttttggtttgaaattgg |
589 |
Q |
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| || |||| || ||| ||||||||||||||||||||||| |||||| |
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| T |
34765240 |
tgttgttaatatgtactttgaagatatttgatttttggtttggaattgg |
34765192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 44016068 - 44016000
Alignment:
| Q |
321 |
ttgagtagcagcacaagcctggaaactgttcagcttgacaagaatcaattatcaggtacaattccttat |
389 |
Q |
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| T |
44016068 |
ttgagtaactgcacaagccttgcaactgtccagcttgacaagaatcagttatcaggtacaattccttat |
44016000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 467 - 542
Target Start/End: Original strand, 905141 - 905216
Alignment:
| Q |
467 |
caatgagttcattgtcacattcctcgttccaacatttggtcatctcactccttcaatgtagcaagtattgaacact |
542 |
Q |
| |
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|||||| ||||||||||||||| || |||||||| || ||| ||| |||||||||||| | ||||| ||||||||| |
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| T |
905141 |
caatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaacact |
905216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 540
Target Start/End: Complemental strand, 895499 - 895426
Alignment:
| Q |
467 |
caatgagttcattgtcacattcctcgttccaacatttggtcatctcactccttcaatgtagcaagtattgaaca |
540 |
Q |
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| T |
895499 |
caatgaattcattgtcacattcatcattccaacactttctcctcttactccttcaatgcaacaagtcttgaaca |
895426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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