View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15148_low_31 (Length: 250)
Name: NF15148_low_31
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 5419952 - 5419799
Alignment:
| Q |
78 |
caggccagtagtggaacaaagttgtatatatagatggagtatatatggagaagaaattaattaagggcattttggctttcccttagagttcttcatgtcc |
177 |
Q |
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| T |
5419952 |
caggccagtagtggaacaaagttgtatatatagatggagtatatatggagaagaaattaattaagggcattttggctttcccttagagttcttcatgtcc |
5419853 |
T |
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| Q |
178 |
ctataacaagggcactcatgtttgttcccataagttcctgatggcacacactta |
231 |
Q |
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| T |
5419852 |
ctataacaagggcactcatgtttgttcccataagttcctgatggcacacactta |
5419799 |
T |
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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5420027 - 5419994
Alignment:
| Q |
1 |
atatgacacaaagattaatcagctaagaagagta |
34 |
Q |
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| T |
5420027 |
atatgacacaaagattaatcagctaagaagagta |
5419994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 47311741 - 47311832
Alignment:
| Q |
136 |
aattaagggcattttggctttcccttagagttcttcatgtccctataacaagggcactcatgtttgttcccataagttcctgatggcacaca |
227 |
Q |
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| T |
47311741 |
aattaagggcattttcctttgccctttgaattcttcatgtctctgtaacaaggacactcatctttgttgccataagtcccagatggtacaca |
47311832 |
T |
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