View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15148_low_34 (Length: 236)
Name: NF15148_low_34
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 16742580 - 16742789
Alignment:
| Q |
11 |
ttattctccacttacttatttagtgaaatcattggagggagagttgtggatggtgagaaggtttataaatagggtaaaaaatatcaacaaaggtactaat |
110 |
Q |
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| T |
16742580 |
ttattctccacttacttatttagtgaaatcattggatggagagttgtggatggtgagaaggtttataaatagggtaaaaaatatcaacaaaggtactaat |
16742679 |
T |
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| Q |
111 |
tctttacatgtatttaagttggaattgaatgacaaaggtgataagcttatgcatttgtcgaaacttgagagtttaggagacaatgttttatttgtgggtg |
210 |
Q |
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| T |
16742680 |
tctttacatgtatttaagttggaattgaatgacaaaggtgataagcttatgcatttgtcgaaacttgagagtttaggagacaatgttttatttgtgggtg |
16742779 |
T |
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| Q |
211 |
atggcgattc |
220 |
Q |
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| T |
16742780 |
atggcgattc |
16742789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 16724183 - 16724392
Alignment:
| Q |
11 |
ttattctccacttacttatttagtgaaatcattggagggagagttgtggatggtgagaaggtttataaatagggtaaaaaatatcaacaaaggtactaat |
110 |
Q |
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| T |
16724183 |
ttattctccacttacttatttagtgaaatcatttgatggagagttgtggatggtgagaaggtttataaatagggtaaaaaatatcaacaaaggtactaat |
16724282 |
T |
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| Q |
111 |
tctttacatgtatttaagttggaattgaatgacaaaggtgataagcttatgcatttgtcgaaacttgagagtttaggagacaatgttttatttgtgggtg |
210 |
Q |
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| T |
16724283 |
tctttacatgtatttaagttggaattgaatgacaaaggtgataagcttatgcatttgtcgaaacttgagagtttaggagacaatgttttatttgtgggtg |
16724382 |
T |
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| Q |
211 |
atggcgattc |
220 |
Q |
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| T |
16724383 |
atggcgattc |
16724392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 28408485 - 28408389
Alignment:
| Q |
125 |
taagttggaattgaatgacaaaggtgataagcttatgcatttgtcgaaacttgagagtttaggagacaatgttttatttgtgggtgatggcgattct |
221 |
Q |
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| T |
28408485 |
taagttggaattggatcttaaaagtggtaagcttatacatatgttaagacttgatagtttgggagacaatgttttatttttgggtgatagtgattct |
28408389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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