View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15148_low_36 (Length: 221)
Name: NF15148_low_36
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 9827129 - 9827319
Alignment:
| Q |
15 |
caaagggcaacatactgcatacacgtctctattccaaatgatggcggaaatttatttctggtttaattacttacgaggcatgaacacctgaaattagaga |
114 |
Q |
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| T |
9827129 |
caaagtgcaacatactgcatacacgtctctattccaaatgatggcggaaatttatttctggtttaattactcgcgaggcatgaacacctgaaattagaga |
9827228 |
T |
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| Q |
115 |
agtagctcattactttgtatatttcagttcaggaaatttgaaatttataggaagataaatgaaaagataaatgtaaaaccttagtttgtct |
205 |
Q |
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| T |
9827229 |
agtagcccattactttgtatatttcagttcaggaaatttgaaatttataggaagataaatgaaaagataaatgtaaaaccttagtttgtct |
9827319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 9835498 - 9835688
Alignment:
| Q |
15 |
caaagggcaacatactgcatacacgtctctattccaaatgatggcggaaatttatttctggtttaattacttacgaggcatgaacacctgaaattagaga |
114 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9835498 |
caaagtgcaacatactgcatacacgtctctattccaaatgatggcggaaatttatttctggtttaattactcgcgaggcatgaacacctgaaattagaga |
9835597 |
T |
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| Q |
115 |
agtagctcattactttgtatatttcagttcaggaaatttgaaatttataggaagataaatgaaaagataaatgtaaaaccttagtttgtct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9835598 |
agtagctcattactttgtatatttcagttcaggaaatttgaaatttataggaggataaatgaaaagataaatgtaaaaccttagtttgtct |
9835688 |
T |
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