View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15148_low_6 (Length: 489)
Name: NF15148_low_6
Description: NF15148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15148_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 3 - 473
Target Start/End: Complemental strand, 9796331 - 9795855
Alignment:
| Q |
3 |
aatactatgtcattatatgttcatttgtatttgtattt------tgttaatagtgttaattaacaattatgtcttattctatattgtggctataggaatc |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9796331 |
aatactatgtcattatatgttcatttgtatttgtatttgtattttgttaatagtgttaattaacaattatgtcttattctatattgtggctataggaatc |
9796232 |
T |
|
| Q |
97 |
aaatcttaatactattgttggccttaaaacaaatacagaagataaatcagaatttccacttatattgagatctggaagcagttctgagaaaggaccaaag |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9796231 |
aaatcttaatactattgttggccttaaaacaaatacagaagataaatcagaatttccacttatattgagatctggaagcagttctgagaaaggaccaaag |
9796132 |
T |
|
| Q |
197 |
caatacatggaggatgaatttatatgtattgatattcttagtgaatctattgcacaacaactagaccttccatctccatcagcattttatggggtatgtt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9796131 |
caatacatggaggatgaatttatatgtattgatattcttagagaatctattgcacaacaagtagaccttccatatccatcagcattttatggggtatgtt |
9796032 |
T |
|
| Q |
297 |
tctttctaagttgagtaatcttctatgtggttgtannnnnnncatggagattatgtaatgttaatttaatatgcaggtatttgatggacatggtggtgtt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9796031 |
tctttctaagttgagtaatcttctatgtggttgtatttttttcatggagattatgtaatgttaatttaatatgcaggtatttgatggacatggtggtgtt |
9795932 |
T |
|
| Q |
397 |
gacgcagcatcatttatcaaaaagaacatgcttaagtttataactgaagattctcaattcccatctagcattaaaaa |
473 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9795931 |
gatgcagcatcatttatcaaaaagaacatgcttaagtttataactgaagattctcaattcccatctagcattaaaaa |
9795855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University