View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1514_high_1 (Length: 567)

Name: NF1514_high_1
Description: NF1514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1514_high_1
NF1514_high_1
[»] chr6 (12 HSPs)
chr6 (27-449)||(27133585-27134008)
chr6 (13-116)||(23898768-23898872)
chr6 (13-108)||(9062864-9062960)
chr6 (13-116)||(8307907-8308009)
chr6 (13-106)||(31247702-31247796)
chr6 (27-106)||(31238332-31238412)
chr6 (469-500)||(27133534-27133565)
chr6 (20-89)||(2660340-2660410)
chr6 (21-60)||(7133324-7133364)
chr6 (21-60)||(7136247-7136287)
chr6 (98-150)||(9063106-9063158)
chr6 (514-550)||(27133503-27133539)
[»] chr3 (11 HSPs)
chr3 (18-109)||(45745514-45745606)
chr3 (22-108)||(11083223-11083309)
chr3 (21-106)||(34809154-34809240)
chr3 (41-121)||(51672504-51672584)
chr3 (42-121)||(24924582-24924661)
chr3 (19-119)||(37509243-37509345)
chr3 (27-141)||(52201275-52201387)
chr3 (21-115)||(53706622-53706710)
chr3 (13-110)||(8557586-8557684)
chr3 (61-110)||(44544988-44545037)
chr3 (18-110)||(53256594-53256687)
[»] chr2 (8 HSPs)
chr2 (13-116)||(37807238-37807342)
chr2 (31-116)||(37985148-37985233)
chr2 (21-121)||(5963944-5964045)
chr2 (21-116)||(8257247-8257343)
chr2 (21-116)||(33839582-33839679)
chr2 (10-116)||(45475158-45475266)
chr2 (25-103)||(11912154-11912230)
chr2 (26-106)||(33500099-33500180)
[»] chr7 (6 HSPs)
chr7 (13-115)||(47639493-47639596)
chr7 (13-122)||(41750661-41750771)
chr7 (41-116)||(28749917-28749992)
chr7 (13-116)||(24613188-24613289)
chr7 (31-115)||(10980654-10980739)
chr7 (21-109)||(24685762-24685851)
[»] chr4 (13 HSPs)
chr4 (18-116)||(52708510-52708609)
chr4 (27-116)||(32004413-32004503)
chr4 (13-116)||(46737247-46737351)
chr4 (24-116)||(38179835-38179928)
chr4 (21-116)||(55292302-55292398)
chr4 (21-151)||(53599297-53599427)
chr4 (13-110)||(779742-779841)
chr4 (27-116)||(16467873-16467962)
chr4 (16-116)||(15030658-15030759)
chr4 (27-134)||(27924004-27924115)
chr4 (27-116)||(35803529-35803619)
chr4 (13-116)||(47769655-47769755)
chr4 (13-116)||(49767562-49767666)
[»] scaffold0024 (1 HSPs)
scaffold0024 (41-150)||(36208-36317)
[»] chr1 (19 HSPs)
chr1 (13-121)||(14321033-14321142)
chr1 (13-116)||(24084145-24084249)
chr1 (13-119)||(27858709-27858813)
chr1 (13-117)||(35838333-35838437)
chr1 (14-123)||(34767267-34767377)
chr1 (59-116)||(15646129-15646186)
chr1 (18-116)||(26663109-26663207)
chr1 (27-111)||(44107698-44107783)
chr1 (13-116)||(21182978-21183082)
chr1 (22-117)||(5302381-5302477)
chr1 (21-106)||(25113815-25113901)
chr1 (21-116)||(1267072-1267168)
chr1 (21-107)||(5117151-5117238)
chr1 (18-88)||(15932664-15932735)
chr1 (25-115)||(30640222-30640313)
chr1 (13-110)||(48982848-48982946)
chr1 (23-110)||(1656781-1656870)
chr1 (21-109)||(3445638-3445727)
chr1 (23-123)||(24902263-24902364)
[»] chr5 (4 HSPs)
chr5 (13-116)||(39074999-39075100)
chr5 (31-116)||(3247712-3247798)
chr5 (24-116)||(40197640-40197733)
chr5 (19-106)||(22732139-22732227)
[»] chr8 (4 HSPs)
chr8 (24-119)||(11517589-11517685)
chr8 (42-104)||(26750484-26750546)
chr8 (57-116)||(21575444-21575503)
chr8 (31-106)||(26040122-26040197)


Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 27 - 449
Target Start/End: Complemental strand, 27134008 - 27133585
Alignment:
Q  27 attaaaaacaacaatttttg-actttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaattaatgcta 125  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||||| ||||||      
T  27134008 attaaaaacaacaatttttttactttcatatagttaaacattccacttttcaccaattttcaatgcaaaattactatattaatcttcttaactaatgcct 27133909  T
Q  126 taaggacactagttactattttcctataattataataacttgaagtataagtttatgtttaggactgtaaagtcaaataaagacaaatagaagtgcatgt 225  Q
    |||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27133908 taagaacactaattagtattttcctataattataataacttgaagtataagtttatgtttagaactgtaaagtcaaataaagacaaatagaagtgcatgt 27133809  T
Q  226 aagctttacgagcttaattgatggaaaagttttggatgataaactttccatacttgatagagcaagctcaataaacactcattgtacgtaatggggatga 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27133808 aagctttacgagcttaattgatggaaaagttttggatgataaactttccttacttgatagagcaacctcaataaacactcattgtacgtaatggggatga 27133709  T
Q  326 gtaaaaattttggggatgaaactttctttacttcaccctaactttaaatgtaaacatctaaaaaagtacatattatgtatgtttcgaaaatactcttctg 425  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27133708 gtaaaaaatttggggatgaaactttctttacttcatcctaactttaaatgcaaacatctaaaaaagtacatattatgtatgtttcgaaaatacacttctg 27133609  T
Q  426 aaaatatgtgttgcgttttttgtt 449  Q
    ||||||||||||||||||||||||    
T  27133608 aaaatatgtgttgcgttttttgtt 27133585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 23898768 - 23898872
Alignment:
Q  13 aatataaattttttattaaaaacaacaatttttg-actttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatctt 111  Q
    |||| ||| |||| ||||||||||| | |||||  ||||||||| |||||||||||||| ||| ||||||||| |||| || ||||||||| ||||||||    
T  23898768 aatagaaaattttcattaaaaacaaaactttttttactttcataaagttaaacattccactttccatcaatttccaatacataatttctatgttaatctt 23898867  T
Q  112 cttaa 116  Q
    |||||    
T  23898868 cttaa 23898872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 9062864 - 9062960
Alignment:
Q  13 aatataaattttttattaaaaacaacaatttttga-ctttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaat 108  Q
    |||| ||| |||| |||||||||||||| |||| | |||||||| |||||||||||| | |||||| |||||| |||| || |||||||||||||||    
T  9062864 aatagaaaattttcattaaaaacaacaactttttatctttcataaagttaaacattcaacttttcaccaatttccaatgcataatttctatattaat 9062960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 8308009 - 8307907
Alignment:
Q  13 aatataaattttttattaaaaacaacaatttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttc 112  Q
    |||| ||| |||| ||| |||||||||| ||| |||||| ||| | | |||||||||| ||||||||||||| |||| || ||||||||||||||||| |    
T  8308009 aatagaaaattttcatttaaaacaacaacttt-gacttttataaaatcaaacattccacttttcatcaatttccaatgcataatttctatattaatctcc 8307911  T
Q  113 ttaa 116  Q
    ||||    
T  8307910 ttaa 8307907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 31247796 - 31247702
Alignment:
Q  13 aatataaattttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatatta 106  Q
    |||| |||||||  |||||||||||||| ||||||||||| ||| |||  |||||| || ||||||||| ||| |||| ||||||||||||||||    
T  31247796 aatagaaattttccattaaaaacaacaactttttgacttttataaagtggaacatttcacttttcatcattttccaatgcaaaatttctatatta 31247702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 31238412 - 31238332
Alignment:
Q  27 attaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatatta 106  Q
    |||||||||||||| ||||||||||| ||| |||  |||||| || ||||||||| ||| |||| ||||||||||||||||    
T  31238412 attaaaaacaacaactttttgacttttataaagtggaacatttcacttttcatcattttccaatgcaaaatttctatatta 31238332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 27133565 - 27133534
Alignment:
Q  469 gtgtttgaaattgaaatttcatcaacaaaagt 500  Q
    ||||||||||||||||||||||||||||||||    
T  27133565 gtgtttgaaattgaaatttcatcaacaaaagt 27133534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 2660410 - 2660340
Alignment:
Q  20 attttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaat 89  Q
    ||||| ||||||||||||||| ||||| ||||| ||| ||| |||| ||| | ||||||||||||||||||    
T  2660410 attttctattaaaaacaacaactttttaacttttataaagtgaaacgttctacttttcatcaattttcaat 2660340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 7133364 - 7133324
Alignment:
Q  21 ttttttattaaaaacaacaat-ttttgactttcatatagtt 60  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  7133364 ttttttattaaaaacaacaattttttgactttcataaagtt 7133324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 7136287 - 7136247
Alignment:
Q  21 ttttttattaaaaacaacaat-ttttgactttcatatagtt 60  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  7136287 ttttttattaaaaacaacaattttttgactttcataaagtt 7136247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 9063106 - 9063158
Alignment:
Q  98 tctatattaatcttcttaattaatgctataaggacactagttactattttcct 150  Q
    ||||||||||||||||||| ||||||| | ||| |||||||||  ||||||||    
T  9063106 tctatattaatcttcttaactaatgctcttagggcactagttagcattttcct 9063158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 550
Target Start/End: Complemental strand, 27133539 - 27133503
Alignment:
Q  514 aaaagtcaaaactacataaacataaggttgagtctct 550  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  27133539 aaaagttaaaactaaataaacataaggttgagtctct 27133503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 45745606 - 45745514
Alignment:
Q  18 aaattttttattaaaaacaacaattttt-gactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatc 109  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| || ||||||||||||||||    
T  45745606 aaattttttattaaaatcaacaattttttgactttcataaagttaaacattccattttttatcaattttcaatgcataatttctatattaatc 45745514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 11083309 - 11083223
Alignment:
Q  22 tttttattaaaaacaacaatttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaat 108  Q
    |||||||||||||||| ||||||| ||||| ||| |||||||||||||||||||||   |||| || | || |||||||||||||||    
T  11083309 tttttattaaaaacaataattttttacttttataaagttaaacattccatttttcactcatttccattgcataatttctatattaat 11083223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 34809240 - 34809154
Alignment:
Q  21 ttttttattaaaaacaacaattttt-gactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatatta 106  Q
    ||||||||||||| ||||||||||| |||||||||| |||||||||||| | |||||| || || ||||| |||| |||||||||||    
T  34809240 ttttttattaaaagcaacaattttttgactttcataaagttaaacattctacttttcaccatttctcaatgcaaagtttctatatta 34809154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 51672584 - 51672504
Alignment:
Q  41 tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaattaat 121  Q
    ||||| ||||| ||| ||||||||||| ||||||||| ||||||  ||| || ||||||||||||||||||||||| ||||    
T  51672584 tttttaactttaataaagttaaacatttcatttttcaccaatttctaatgcataatttctatattaatcttcttaactaat 51672504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 24924582 - 24924661
Alignment:
Q  42 ttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaattaat 121  Q
    |||| ||||||||| || ||||||||  | |||||| ||||||| ||| || ||||||||||||||||||||||| ||||    
T  24924582 ttttaactttcataaagctaaacattatacttttcaccaatttttaatgcataatttctatattaatcttcttaactaat 24924661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 37509243 - 37509345
Alignment:
Q  19 aattttttattaaaaacaacaa---tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttctta 115  Q
    |||||||||||||| |||||||   |||||||||||  || | | |||||||||| ||||||||| || |||||||||| |||  ||| |||||||||||    
T  37509243 aattttttattaaagacaacaactctttttgacttttctaaaatgaaacattccacttttcatcatttctcaattcaaagttttcata-taatcttctta 37509341  T
Q  116 atta 119  Q
    ||||    
T  37509342 atta 37509345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 52201387 - 52201275
Alignment:
Q  27 attaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaattaatgcta 125  Q
    |||||||||||||| ||||||||||| |   ||||||||||| || |||| | ||||||  ||| |||||||| ||||||||||||||||| || |||      
T  52201387 attaaaaacaacaactttttgactttaa---agttaaacatttcactttttaccaatttctaatccaaaatttatatattaatcttcttaactagtgcct 52201291  T
Q  126 taaggacactagttac 141  Q
    ||||| || |||||||    
T  52201290 taagggcaatagttac 52201275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 53706710 - 53706622
Alignment:
Q  21 ttttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttctta 115  Q
    ||||||||||||||||| || ||||||||||| ||| ||||| ||       ||||||||||||| |||| |||||||| ||||||||||||||||    
T  53706710 ttttttattaaaaacaataactttttgactttaataaagttacac-------ttttcatcaatttccaatgcaaaatttttatattaatcttctta 53706622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 8557684 - 8557586
Alignment:
Q  13 aatataaattttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatct 110  Q
    |||| ||| ||||||||||| ||||||| || ||||||||  || ||| |||||||||| ||||||||| ||  |||| |||| |||| ||||||||||    
T  8557684 aatagaaactttttattaaagacaacaacttattgacttttctaaagtgaaacattccacttttcatcatttcccaatgcaaagtttccatattaatct 8557586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 44544988 - 44545037
Alignment:
Q  61 aaacattccatttttcatcaattttcaattcaaaatttctatattaatct 110  Q
    |||||||||||||||||||| || ||||| |||| |||| ||||||||||    
T  44544988 aaacattccatttttcatcatttctcaatacaaagtttccatattaatct 44545037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 53256594 - 53256687
Alignment:
Q  18 aaattttttattaaaaacaacaatttt-tgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatct 110  Q
    ||||||| |||||||||||| |||||| ||||||||||| | | |||||||  | |||| |||| |||| ||| ||||||||| || |||||||    
T  53256594 aaattttatattaaaaacaataattttttgactttcataaattgaaacattttactttttatcactttttaatgcaaaatttccattttaatct 53256687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 37807342 - 37807238
Alignment:
Q  13 aatataaattttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatctt 111  Q
    |||| ||||||||||||||||||||||  ||||||||||||||| ||||||||||| ||||||||| ||||||  ||| || ||||||||||||||||||    
T  37807342 aatagaaattttttattaaaaacaacacctttttgactttcataaagttaaacatttcatttttcaccaatttgtaatgcataatttctatattaatctt 37807243  T
Q  112 cttaa 116  Q
    |||||    
T  37807242 cttaa 37807238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 37985233 - 37985148
Alignment:
Q  31 aaaacaacaatttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaa 116  Q
    ||||||||||||||||||||||||| |||| |||||| || |||||| |||||||||||  | |||||||||||||||||| ||||    
T  37985233 aaaacaacaatttttgactttcataaagtttaacatttcacttttcaccaattttcaatgtataatttctatattaatcttattaa 37985148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 5964045 - 5963944
Alignment:
Q  21 ttttttattaaaaacaacaatttttga-ctttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaatta 119  Q
    |||||||||| |||||| ||||||| | |||||||| | ||||| |||||| |||||||||||||||||| || ||||| |||||||||||| |||| ||    
T  5964045 ttttttattataaacaataattttttaactttcataaaattaaatattccacttttcatcaattttcaatgcataatttttatattaatctttttaacta 5963946  T
Q  120 at 121  Q
    ||    
T  5963945 at 5963944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 8257247 - 8257343
Alignment:
Q  21 ttttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaa 116  Q
    |||||||||||| ||||||| |||||||||||  || |||  ||||||||||||||||||| ||  |||| |||| ||||||||||||||| |||||    
T  8257247 ttttttattaaagacaacaactttttgacttttctaaagtggaacattccatttttcatcatttcccaatgcaaagtttctatattaatctccttaa 8257343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 33839582 - 33839679
Alignment:
Q  21 ttttttattaaaaacaacaatttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaattt---ctatattaatcttcttaa 116  Q
    |||||||||||||||||||| |||| | |||  || ||||||| ||| ||||||||| ||||||||||| || |||||   ||||||||||||||||||    
T  33839582 ttttttattaaaaacaacaactttttaatttt-taaagttaaatatttcatttttcaccaattttcaatgcataatttctactatattaatcttcttaa 33839679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 45475158 - 45475266
Alignment:
Q  10 aagaatataaattttttattaaa-aacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaa 107  Q
    |||||||||||||||  || ||| ||||| || ||||||||||| ||| |||  |||||||||| |||||||| || ||||| ||||| ||||| |||||    
T  45475158 aagaatataaattttccataaaagaacaataactttttgactttaataaagtagaacattccatatttcatcatttctcaatgcaaaacttctaaattaa 45475257  T
Q  108 tcttcttaa 116  Q
    ||| |||||    
T  45475258 tctccttaa 45475266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 11912230 - 11912154
Alignment:
Q  25 ttattaaaaacaacaatttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctata 103  Q
    |||||||||| |||||||||||||||||  | ||| ||||||| ||||||| |||| ||  |||| |||||||||||||    
T  11912230 ttattaaaaaaaacaatttttgactttc--aaagtgaaacatttcattttttatcatttcccaatgcaaaatttctata 11912154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 33500099 - 33500180
Alignment:
Q  26 tattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatatta 106  Q
    |||||||||| |||| ||||| ||||| |||  || |||||||||| ||||||||| |||  ||| ||||||||||||||||    
T  33500099 tattaaaaacgacaactttttaacttttataaggtgaaacattccacttttcatcactttctaatacaaaatttctatatta 33500180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 47639596 - 47639493
Alignment:
Q  13 aatataaattttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatctt 111  Q
    |||| ||| |||| |||||||||||||| ||||||||||| ||| ||||||||||| |||||||||||||||||||||  | ||||||||||||||| ||    
T  47639596 aatagaaaattttcattaaaaacaacaactttttgacttttataaagttaaacatttcatttttcatcaattttcaatgaataatttctatattaatatt 47639497  T
Q  112 ctta 115  Q
    ||||    
T  47639496 ctta 47639493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 41750661 - 41750771
Alignment:
Q  13 aatataaattttttattaaaaacaacaatttt-tgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatctt 111  Q
    ||||||| |||||||||||| |||| |||||| |||||||  || ||| |||||||||| ||||||||| |||||||| |||| |||| ||||||||||     
T  41750661 aatataatttttttattaaagacaataattttttgacttttctaaagtgaaacattccacttttcatcatttttcaatgcaaattttccatattaatctc 41750760  T
Q  112 cttaattaatg 122  Q
    |||||||||||    
T  41750761 cttaattaatg 41750771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 28749992 - 28749917
Alignment:
Q  41 tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaa 116  Q
    ||||| ||||||||| |||||||||||| | ||||||||||||| |||| || |||||||||||||||||||||||    
T  28749992 ttttttactttcataaagttaaacattctacttttcatcaatttccaatgcataatttctatattaatcttcttaa 28749917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 24613289 - 24613188
Alignment:
Q  13 aatataaattttttattaaaaacaacaatttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttc 112  Q
    |||| ||| |||| ||||||||||||  ||||||||||||||| |||| ||||||| | ||||||  |||| ||||| |||||||||||||||| | |||    
T  24613289 aatagaaaattttcattaaaaacaac--tttttgactttcataaagttgaacattctacttttcactaattctcaatgcaaaatttctatattagttttc 24613192  T
Q  113 ttaa 116  Q
    ||||    
T  24613191 ttaa 24613188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 10980739 - 10980654
Alignment:
Q  31 aaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttctta 115  Q
    |||||||||| ||||| ||||| ||| |||||||||||| | ||||||  |||||||||| || ||||| ||||||||||||||||    
T  10980739 aaaacaacaactttttaacttttataaagttaaacattctacttttcactaattttcaatacataatttatatattaatcttctta 10980654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 24685851 - 24685762
Alignment:
Q  21 ttttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatc 109  Q
    |||||||||||  ||||||| |||||||||||  || |||  || |||||| ||||||||| ||| |||| |||| ||||||||||||||    
T  24685851 ttttttattaaggacaacaactttttgacttttctaaagtggaatattccacttttcatcattttccaatgcaaagtttctatattaatc 24685762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 52708510 - 52708609
Alignment:
Q  18 aaattttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaa 116  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||| | ||||||  ||||||||||  | |||||||||||||| ||||||||    
T  52708510 aaattttttattaaaaacaacaactttttgactttcataaagttaaacattcaacttttcactaattttcaatgtacaatttctatattaaccttcttaa 52708609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 32004503 - 32004413
Alignment:
Q  27 attaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaa 116  Q
    |||||||||||||| ||||||||||||||| |||||||||||||| |||||  ||||||| ||| || |||||||||||||||||||||||    
T  32004503 attaaaaacaacaactttttgactttcataaagttaaacattccacttttccccaattttaaatgcataatttctatattaatcttcttaa 32004413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 46737351 - 46737247
Alignment:
Q  13 aatataaattttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatctt 111  Q
    |||| ||| |||| ||||||||||| || ||||||| ||||||| |||||||||||||| ||||||||||||| |||| || |||||||||||| |||||    
T  46737351 aatagaaaattttcattaaaaacaataactttttgattttcataaagttaaacattccacttttcatcaatttccaatgcagaatttctatatttatctt 46737252  T
Q  112 cttaa 116  Q
    |||||    
T  46737251 cttaa 46737247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 38179928 - 38179835
Alignment:
Q  24 tttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaa 116  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||||| | ||||||| |||||  ||| || |||||||||||||||||||||||    
T  38179928 tttattaaaaacatcaactttttgactttcataaagttaaacattcaacttttcataaatttctaatacataatttctatattaatcttcttaa 38179835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 55292302 - 55292398
Alignment:
Q  21 ttttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaa 116  Q
    ||||| |||||||||||||| ||||||| ||||||| | ||||||||| || |||||| ||||||| ||| || |||||||||||||||||||||||    
T  55292302 tttttcattaaaaacaacaactttttgattttcataaaattaaacatttcagttttcaccaatttttaatacataatttctatattaatcttcttaa 55292398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 53599427 - 53599297
Alignment:
Q  21 ttttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaatta 119  Q
    ||||||||||||||||| || ||||| ||||||||| ||||||||||| ||||||||||||||||  |||  | ||||||||||||||| || |||| ||    
T  53599427 ttttttattaaaaacaataacttttttactttcataaagttaaacattacatttttcatcaatttctaatgtataatttctatattaat-tttttaagta 53599329  T
Q  120 atgctataaggacactagttactattttccta 151  Q
     |||  | |||||||||||||  |||||||||    
T  53599328 gtgcccttaggacactagttagcattttccta 53599297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 779841 - 779742
Alignment:
Q  13 aatataaattttttattaaaaacaacaa--tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatct 110  Q
    |||| ||| |||| ||||||||||||||  ||||||||||||||| |||||||||||| | |||||| ||||||  ||| || |||||||||||||||||    
T  779841 aatagaaaattttcattaaaaacaacaacttttttgactttcataaagttaaacattcaacttttcaccaatttcaaatgcataatttctatattaatct 779742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 16467873 - 16467962
Alignment:
Q  27 attaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaa 116  Q
    ||||||||||| || ||||| ||||||||| |||||||||||| | ||| ||||||||| |||| || |||||||||||||||||||||||    
T  16467873 attaaaaacaataacttttttactttcataaagttaaacattcaacttt-catcaatttccaatgcataatttctatattaatcttcttaa 16467962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 15030759 - 15030658
Alignment:
Q  16 ataaattttttattaaaaacaacaattt-ttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttctt 114  Q
    ||||||||| ||||||||||||||| || |||||||||||| |||  |||| |||| |||| |||| ||| |||| |||||||| ||||||| |||||||    
T  15030759 ataaattttctattaaaaacaacaacttattgactttcataaagtagaacaatccacttttaatcactttccaatacaaaatttatatattagtcttctt 15030660  T
Q  115 aa 116  Q
    ||    
T  15030659 aa 15030658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 27924004 - 27924115
Alignment:
Q  27 attaaaaacaacaatttttg----actttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaattaatg 122  Q
    |||||||||||||||||||     || || ||| |||||||||||| | ||| || |||||| |||| || ||||||||||||||||||||||| || ||    
T  27924004 attaaaaacaacaattttttttttacctttataaagttaaacattcaactttccaccaatttccaatgcataatttctatattaatcttcttaactagtg 27924103  T
Q  123 ctataaggacac 134  Q
    | ||||||||||    
T  27924104 ccataaggacac 27924115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 35803529 - 35803619
Alignment:
Q  27 attaaaaacaacaatttttga-ctttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaa 116  Q
    ||||||||||||||||||| | | || ||| ||||||| ||| || |||| | ||||||||||| || |||||||||||||| ||||||||    
T  35803529 attaaaaacaacaattttttaacgtttataaagttaaatatttcactttttaccaattttcaatgcataatttctatattaaacttcttaa 35803619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 47769755 - 47769655
Alignment:
Q  13 aatataaattttttattaaaaacaacaatttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttc 112  Q
    |||||||| |||| ||||||||||| | ||||||| ||| ||| ||||||||||| || ||  || ||||||||||| || ||||| ||||||||||||     
T  47769755 aatataaaattttcattaaaaacaa-attttttgatttttataaagttaaacatttcactt--caccaattttcaatacataatttttatattaatcttt 47769659  T
Q  113 ttaa 116  Q
    ||||    
T  47769658 ttaa 47769655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 49767666 - 49767562
Alignment:
Q  13 aatataaattttttattaaaaacaacaatttttga-ctttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatctt 111  Q
    |||| ||| |||| |||||||| || ||||||| | |||| ||| ||||||||||| || |||||||||||||||||| |  ||||| |||||| |||||    
T  49767666 aatagaaaattttcattaaaaataataatttttaaacttttataaagttaaacatttcacttttcatcaattttcaatgctgaatttttatatttatctt 49767567  T
Q  112 cttaa 116  Q
     ||||    
T  49767566 tttaa 49767562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 36317 - 36208
Alignment:
Q  41 tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaattaatgctataaggacactagtta 140  Q
    ||||||||||||||| ||||||||||||||||||||| | |||| |||| || |||||||||| || ||||||||| || |||  |||||||||||||||    
T  36317 tttttgactttcataaagttaaacattccatttttcaccgatttccaatgcataatttctataatagtcttcttaactagtgccctaaggacactagtta 36218  T
Q  141 ctattttcct 150  Q
      ||||||||    
T  36217 gcattttcct 36208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 14321033 - 14321142
Alignment:
Q  13 aatataaattttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatctt 111  Q
    |||| ||| |||| |||||||||||||| ||||| ||||||||| | |||||||||  | |||||||||||||||||| || ||||||||||||||||||    
T  14321033 aatagaaaattttcattaaaaacaacaacttttttactttcataaaattaaacattttacttttcatcaattttcaatgcataatttctatattaatctt 14321132  T
Q  112 cttaattaat 121  Q
    ||||| ||||    
T  14321133 cttaactaat 14321142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 24084249 - 24084145
Alignment:
Q  13 aatataaattttttattaaaaacaacaattttt-gactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatctt 111  Q
    |||| ||| |||| || |||||||||||||||| |||||||||| |||||||||||||| |||| ||||||||||||| || ||||| ||||||||||||    
T  24084249 aatagaaaattttcatcaaaaacaacaattttttgactttcataaagttaaacattccactttttatcaattttcaatacataatttttatattaatctt 24084150  T
Q  112 cttaa 116  Q
     ||||    
T  24084149 tttaa 24084145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 27858709 - 27858813
Alignment:
Q  13 aatataaattttttattaaaaacaacaatttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttc 112  Q
    |||| ||||||||||||||||||||   ||||||||||||||| | |||||||||| | |||||| ||||||||||  || ||||| |||||||||||||    
T  27858709 aatagaaattttttattaaaaacaat--tttttgactttcataaacttaaacattcaacttttcaccaattttcaacgcataatttttatattaatcttc 27858806  T
Q  113 ttaatta 119  Q
    |||||||    
T  27858807 ttaatta 27858813  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 35838333 - 35838437
Alignment:
Q  13 aatataaattttttattaaaaacaacaattttt-gactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatctt 111  Q
    |||||||| ||||||||||||| |||||||||| |||||||||| |||||| ||||| | |||||| ||||||||||| || ||||| |||||| |||||    
T  35838333 aatataaaatttttattaaaaataacaattttttgactttcataaagttaa-cattctacttttcaccaattttcaatgcataatttttatatttatctt 35838431  T
Q  112 cttaat 117  Q
    ||||||    
T  35838432 cttaat 35838437  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 34767377 - 34767267
Alignment:
Q  14 atataaattttttattaaaaacaacaattttt-gactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttc 112  Q
    ||||||| |||| |||||||| || ||||||| |||||| ||||||||| |||||  |||||||| ||||||||||  || ||||| |||||||||||||    
T  34767377 atataaaattttcattaaaaataataattttttgacttttatatagttacacattttatttttcaccaattttcaaggcataatttttatattaatcttc 34767278  T
Q  113 ttaattaatgc 123  Q
    |||| ||||||    
T  34767277 ttaactaatgc 34767267  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 15646186 - 15646129
Alignment:
Q  59 ttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaa 116  Q
    |||||||||||| |||||||||||||||||| || |||||||||||||||||||||||    
T  15646186 ttaaacattccacttttcatcaattttcaatgcataatttctatattaatcttcttaa 15646129  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 26663207 - 26663109
Alignment:
Q  18 aaattttttattaaaaacaacaat-ttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaa 116  Q
    |||||||| ||||||| ||||||  |||||| ||||||| |||| ||||||| | |||||||||||||| ||| ||||| ||||||||||||||||||||    
T  26663207 aaatttttcattaaaa-caacaaccttttgattttcatagagttgaacattcaacttttcatcaatttttaatgcaaaaattctatattaatcttcttaa 26663109  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 44107783 - 44107698
Alignment:
Q  27 attaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatctt 111  Q
    |||||||||||||| ||||||||||||||| || ||||||||| | |||||| |||||| |||| || |||||| |||||||||||    
T  44107783 attaaaaacaacaactttttgactttcataaaggtaaacattctacttttcaccaatttccaatacataatttcaatattaatctt 44107698  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 21182978 - 21183082
Alignment:
Q  13 aatataaattttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatctt 111  Q
    ||||||||| |||||||||| ||||||| |||||||||||  || |||  ||||||||||||||||||| ||  |||| |||| |||  |||||||||||    
T  21182978 aatataaatcttttattaaagacaacaactttttgacttttctaaagtggaacattccatttttcatcatttcccaatgcaaagttttcatattaatctt 21183077  T
Q  112 cttaa 116  Q
    |||||    
T  21183078 cttaa 21183082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 5302381 - 5302477
Alignment:
Q  22 tttttattaaaaacaacaatttttga-ctttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaat 117  Q
    |||| ||||||||||||||||||| | |||||||| ||||||| ||| ||||||||| | |||| |||| || ||| | | ||||||||||||||||    
T  5302381 ttttcattaaaaacaacaattttttaactttcataaagttaaatatttcatttttcaccgatttccaatgcataatctatgtattaatcttcttaat 5302477  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 25113901 - 25113815
Alignment:
Q  21 ttttttattaaaaacaacaa--tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatatta 106  Q
    ||||| || |||||||||||  ||||||||||||||| |||||||||||| |||||||| ||| || | || ||||||||||||||||    
T  25113901 tttttcataaaaaacaacaacttttttgactttcataaagttaaacattctatttttcaccaa-ttcccatgcaaaatttctatatta 25113815  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 1267168 - 1267072
Alignment:
Q  21 ttttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaa 116  Q
    |||||||||||| ||||||| |||||||||||  || |||  ||||||||| ||||| ||| ||| ||||  |||||||| |||||||||| |||||    
T  1267168 ttttttattaaagacaacaactttttgacttttctaaagtggaacattccacttttcttcactttccaatgtaaaatttccatattaatctccttaa 1267072  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 5117238 - 5117151
Alignment:
Q  21 ttttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaa 107  Q
    |||||||||||| ||||||| |||||| ||||   | ||| |||||||||| ||||||||| |||||||| |||| |||| |||||||    
T  5117238 ttttttattaaagacaacaactttttgtcttttcgaaagtgaaacattccacttttcatcatttttcaatgcaaagtttccatattaa 5117151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 15932664 - 15932735
Alignment:
Q  18 aaattttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaa 88  Q
    |||| |||||||||||||||||| |||||  |||| ||| |||||||||||||| |||||| || |||||||    
T  15932664 aaatattttattaaaaacaacaattttttttcttttataaagttaaacattccacttttcaccatttttcaa 15932735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 30640313 - 30640222
Alignment:
Q  25 ttattaaaaacaacaattttt-gactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttctta 115  Q
    |||||||||| || ||||||| || ||||||| ||| ||||||| || ||||||| | || ||||| |||||||||||||||| ||| ||||    
T  30640313 ttattaaaaataataattttttgattttcataaagtgaaacattacacttttcattatttctcaatgcaaaatttctatattagtctcctta 30640222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 48982848 - 48982946
Alignment:
Q  13 aatataaattttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatct 110  Q
    |||| ||||||| |||||||||||| || ||||| ||||| ||| |   |||||||| | ||||||||| |||| |||  |||||||||||||||||||    
T  48982848 aatagaaattttctattaaaaacaataacttttttacttttataaaacgaaacattcaacttttcatcattttttaatgtaaaatttctatattaatct 48982946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 1656781 - 1656870
Alignment:
Q  23 ttttattaaaaacaaca-atttttgactttcatatagttaaacattcca-tttttcatcaattttcaattcaaaatttctatattaatct 110  Q
    |||||||||||||||||  ||||| ||||| ||| | |||||||||||| ||||||| ||||||  ||| || ||||| |||||||||||    
T  1656781 ttttattaaaaacaacaccttttttacttttataaatttaaacattccactttttcaccaatttataatgcataatttatatattaatct 1656870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 3445638 - 3445727
Alignment:
Q  21 ttttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatc 109  Q
    |||||||||||| ||||||| ||||| | |||  || |||  ||||||||||||||||||| || ||||| || | ||||||||||||||    
T  3445638 ttttttattaaagacaacaacttttttatttttctaaagtcgaacattccatttttcatcatttctcaatgcagagtttctatattaatc 3445727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 24902263 - 24902364
Alignment:
Q  23 ttttattaaaaacaacaat-ttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaattaat 121  Q
    ||||||||||||||||||  |||||||||||||  | | |||  ||||| |||||| || |||  |||  |||||||||||||||||||| |||| ||||    
T  24902263 ttttattaaaaacaacaaccttttgactttcatgaactgaaatgttccacttttcaccactttctaatgtaaaatttctatattaatcttgttaactaat 24902362  T
Q  122 gc 123  Q
    ||    
T  24902363 gc 24902364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 39075100 - 39074999
Alignment:
Q  13 aatataaattttttattaaaaacaacaatttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttc 112  Q
    |||| ||| |||| ||||||||||||  ||||||||||| ||| ||||||||||||||  ||| ||||||||||||| || |||||||||||||||||||    
T  39075100 aatagaaaattttcattaaaaacaac--tttttgacttttataaagttaaacattccaccttttatcaattttcaatgcataatttctatattaatcttc 39075003  T
Q  113 ttaa 116  Q
    ||||    
T  39075002 ttaa 39074999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 3247712 - 3247798
Alignment:
Q  31 aaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaa 116  Q
    |||||||||| ||||| ||||||||  ||||||||||| || |||||| ||||||| ||| || || ||||||||||||||||||||    
T  3247712 aaaacaacaacttttttactttcatgaagttaaacattacacttttcaccaatttttaatgcataacttctatattaatcttcttaa 3247798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 40197640 - 40197733
Alignment:
Q  24 tttattaaaaacaacaatttttg-actttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaa 116  Q
    ||||||||||||||| ||||||  | ||| ||| | |||||||||||| ||||||  ||||| |||| || |||||||||||||||||||||||    
T  40197640 tttattaaaaacaacgatttttttatttttataaaattaaacattccacttttcactaatttccaatgcataatttctatattaatcttcttaa 40197733  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 22732139 - 22732227
Alignment:
Q  19 aattttttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatatta 106  Q
    ||||||| ||||||||||| || ||||||| ||||||| |||| || |||| | |||||| || |||||||| ||||| ||||||||||    
T  22732139 aatttttcattaaaaacaataattttttgaatttcataaagttgaatattctacttttcaccacttttcaatgcaaaacttctatatta 22732227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 11517589 - 11517685
Alignment:
Q  24 tttattaaaaacaacaa-tttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaatta 119  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||| | |||| | |||||| |||| || ||||| ||||||||| ||||||||||    
T  11517589 tttattaaaaacaacaactttttgactttcataaagttaaacattctactttttaccaatttccaatgcataatttttatattaattttcttaatta 11517685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 26750484 - 26750546
Alignment:
Q  42 ttttgactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatat 104  Q
    |||||||||||||| ||||||||||  |||||||||||||||| |||| || |||||||||||    
T  26750484 ttttgactttcataaagttaaacatctcatttttcatcaatttccaatacataatttctatat 26750546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 21575503 - 21575444
Alignment:
Q  57 agttaaacattccatttttcatcaattttcaattcaaaatttctatattaatcttcttaa 116  Q
    |||||||||||| |||||| | |||||| ||||  | |||||||||||||||||||||||    
T  21575503 agttaaacattctatttttaaccaatttccaatgtataatttctatattaatcttcttaa 21575444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 26040197 - 26040122
Alignment:
Q  31 aaaacaacaattttt-gactttcatatagttaaacattccatttttcatcaattttcaattcaaaatttctatatta 106  Q
    |||||||||| |||| |||||||||| | | |||| ||||| ||||||||| ||| |||| ||||||||||||||||    
T  26040197 aaaacaacaacttttcgactttcataaaatgaaactttccacttttcatca-tttccaatgcaaaatttctatatta 26040122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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