View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1514_high_2 (Length: 358)
Name: NF1514_high_2
Description: NF1514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1514_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 15869100 - 15868901
Alignment:
| Q |
19 |
cctctcttgtaatttcttcacaatttcatacttatgttctgtatagtatcaaacaataggagatattaaggatataattaagaatctatgttgcaccaac |
118 |
Q |
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| T |
15869100 |
cctctcttgtaatttcttcacaatttcatacttatgttctgtatagtattaaacaatcggagatattaaggatataattaagtatctatgttgcaccgac |
15869001 |
T |
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| Q |
119 |
acttcagaataaatgtgtcagtgtgagtgtcttgcgtctggttttcgtgtatgtgtcagtgcttcataggaactgcaccttttcaaaaaacattaggata |
218 |
Q |
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| T |
15869000 |
actttagaataaatgtgtcagtgaaagtgtctt--gtctggttttcgtgtatgtgtcaatgcttcataggaactacaccttttcgaagagcattaggata |
15868903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 235 - 351
Target Start/End: Complemental strand, 15868334 - 15868218
Alignment:
| Q |
235 |
tttcaatacaaatttcaattatgaatccnnnnnnnncaaacctgtgtagcaacaccaagtgaacgtagccctctttctgcaaatttttcaataatagcat |
334 |
Q |
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| T |
15868334 |
tttcaatacaaatttcaattatgaatccaaaaaaaacaaacctgtctagcaacaccaagtgaacgtagccctctttctgcgaacttttcaatgatagcat |
15868235 |
T |
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| Q |
335 |
gaaccttcttcttttca |
351 |
Q |
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| T |
15868234 |
gaaccttcttcttttca |
15868218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 15161915 - 15162020
Alignment:
| Q |
19 |
cctctcttgtaatttcttcacaatttcatacttatgttctgtatagtatcaaacaataggagatattaaggatataattaagaatctatgttgcaccaac |
118 |
Q |
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| T |
15161915 |
cctctcttgtaatttcttcacaatttcatacttatgttctgtatagtattaaacaataggagatattaaggatataattaagaatctatcttgcaccaac |
15162014 |
T |
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| Q |
119 |
acttca |
124 |
Q |
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|||||| |
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| T |
15162015 |
acttca |
15162020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 236 - 351
Target Start/End: Original strand, 15162017 - 15162134
Alignment:
| Q |
236 |
ttcaatacaaatttcaattatgaatccnnnnnnnn--caaacctgtgtagcaacaccaagtgaacgtagccctctttctgcaaatttttcaataatagca |
333 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15162017 |
ttcaatacaaatttcaattatgaatccaaaaaaaaaacaaacctgtctagcaacatcaagtgaacgtagctctctttctgcaaatttttcaataatagca |
15162116 |
T |
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| Q |
334 |
tgaaccttcttcttttca |
351 |
Q |
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|||||||||||||||||| |
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| T |
15162117 |
tgaaccttcttcttttca |
15162134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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