View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1514_high_3 (Length: 255)
Name: NF1514_high_3
Description: NF1514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1514_high_3 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 43 - 247
Target Start/End: Complemental strand, 52800484 - 52800280
Alignment:
| Q |
43 |
gaggaaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcatgagttcgataagttacacgagcaagtgaagaaacctcgagaac |
142 |
Q |
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| T |
52800484 |
gaggaaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcacgagttcgataagttacatgagcaagtgaagaaacctcgagaac |
52800385 |
T |
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| Q |
143 |
aggttgctgacgctgaagcatttctagatctgacacgcactcttgttgaatccattaaatctcttgtcaacgaaggtgttactccttctcagtttgtttc |
242 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52800384 |
aggttgctgacgctgaagcacttctagatctgacacgcactcttgttggatccgttaaatctcttgtcaacgaaggtgttactccttctcagtttgtttc |
52800285 |
T |
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| Q |
243 |
atctc |
247 |
Q |
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||||| |
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| T |
52800284 |
atctc |
52800280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 47 - 247
Target Start/End: Complemental strand, 31984 - 31784
Alignment:
| Q |
47 |
aaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcatgagttcgataagttacacgagcaagtgaagaaacctcgagaacaggt |
146 |
Q |
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||||||||||||| |||||| || ||| || ||||||||||||||||||||||| ||||| |||||| |||||||||||||||| || | ||| ||| | |
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| T |
31984 |
aaaaagatgatttaatgaacactgcttcggacaagttcgattcaatccttcatgacttcgacaagttagacgagcaagtgaagaagccacaagagcagat |
31885 |
T |
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| Q |
147 |
tgctgacgctgaagcatttctagatctgacacgcactcttgttgaatccattaaatctcttgtcaacgaaggtgttactccttctcagtttgtttcatct |
246 |
Q |
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|| ||||||||||||| |||||||||||||||||||||| |||| ||| |||| ||| | || |||||||| |||||||||||||||||||| |||||| |
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| T |
31884 |
tgttgacgctgaagcacttctagatctgacacgcactctggttggatcggttaactctatggtgaacgaaggggttactccttctcagtttgtgtcatct |
31785 |
T |
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| Q |
247 |
c |
247 |
Q |
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| T |
31784 |
c |
31784 |
T |
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