View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1514_low_12 (Length: 237)
Name: NF1514_low_12
Description: NF1514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1514_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4703138 - 4703357
Alignment:
| Q |
1 |
ttttcttatttcttgaggtattgattcttttaagaactaattttatatcttttccgtaggacacaatgctgatatacatgtgattgtaaaaattgaaagt |
100 |
Q |
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| T |
4703138 |
ttttcttatttcttgaggcattgattcttttaagaactaattttatatcttttccgtaggacacaatgctgatatacatgtgattgtaaaaattgaaagt |
4703237 |
T |
|
| Q |
101 |
gcagattccataccaaatcttcattccatactttcagcttcagatggggttagttcctcattgttcaaattatatattgtagtatgcatattttaacccc |
200 |
Q |
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| T |
4703238 |
gcagattccataccaaatcttcattccatactttcagcttcagatggggttagttcctcattgttcaaattatatatt---gtatgcatattttaacccc |
4703334 |
T |
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| Q |
201 |
ttttattaaacatataaaaactg |
223 |
Q |
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| T |
4703335 |
ttttattaaacatataaaaactg |
4703357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 44852813 - 44852766
Alignment:
| Q |
67 |
tgctgatatacatgtgattgtaaaaattgaaagtgcagattccatacc |
114 |
Q |
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| T |
44852813 |
tgctgatatacatgtaattgtaaaaattgaaagtgcagactctatacc |
44852766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 11594740 - 11594793
Alignment:
| Q |
65 |
aatgctgatatacatgtgattgtaaaaattgaaagtgcagattccataccaaat |
118 |
Q |
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| T |
11594740 |
aatgctgatatacatgtcatcgtgaaaattgaaagtgcggattctataccaaat |
11594793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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