View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1514_low_3 (Length: 371)
Name: NF1514_low_3
Description: NF1514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1514_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 8e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 104 - 355
Target Start/End: Complemental strand, 31881632 - 31881377
Alignment:
| Q |
104 |
gtaatcttacctaaacactactacctctcaacctaaaatatcattaatccgtcaaattagttccttaattattttaaaaactgnnnnnnnnnnnnatgat |
203 |
Q |
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| T |
31881632 |
gtaatcttacctaaacactactacctctccacctaaaatatcattaatccgtcaaattagtcccttaattattttaaaaacaggagagagagagaatggt |
31881533 |
T |
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| Q |
204 |
agtttccaaactagcttgatgtattnnnnnnnntatagagaccaattatatttttattgttcacggatcaaatacat----gataataggatcaaattga |
299 |
Q |
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| T |
31881532 |
agtttccgaactagcttgatgtattaaaaaaagtatagagaccaattatatttttattgttcacgaatcaaatacatacatgatagtaggatcaaattga |
31881433 |
T |
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| Q |
300 |
tatttttattcgtaattaagttcggtttaaaagtagaggtaaccctatgccttatt |
355 |
Q |
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| T |
31881432 |
tatttttattcgtaattaagttcggtttaaaagtagaggtaaccctatgccttatt |
31881377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 52 - 355
Target Start/End: Complemental strand, 31885842 - 31885546
Alignment:
| Q |
52 |
cattttatgatttggtagcatgtaaaaacgggtgtaggttagcacactaggggtaatcttacctaaacactactacctctcaacctaaaatatcattaat |
151 |
Q |
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| T |
31885842 |
cattttatgaatcggtagcatgtaaaaacgggtgtaagttagcac--taggggtagtcctacctaaacactactacctctccacctaaaatatcattaat |
31885745 |
T |
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| Q |
152 |
ccgtcaaattagttccttaattattttaaaaactgnnnnnnnnnnnnatgatagtttccaaactagcttgatgtattnnnnnnnntatagagaccaatta |
251 |
Q |
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| T |
31885744 |
ccatcaaattagtcccttaattgttttaaaaacag----gagagagaatggtagtttaggaactagcttggtgtattaaaaaaagtatagagatcaatta |
31885649 |
T |
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| Q |
252 |
tatttttattgttcacggatcaaatacatgataataggatcaaattgatatttttattcgtaattaagttcggtttaaaagtagaggtaaccctatgcct |
351 |
Q |
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| T |
31885648 |
tatttctatagttcacggatcaaatagatgagactggtatcaaattgata-tttaatttgtaattaagttcggtttaaaagtaggggtgaccctaaacct |
31885550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 31881710 - 31881629
Alignment:
| Q |
1 |
ctatgtggtccatagattgactttcgtccacaa------tatggaaagtttttgtcgcattttatgatttggtagcatgtaa |
76 |
Q |
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| T |
31881710 |
ctatttggtccctagattgactttcttccacaagaaaaatatggaaattttttgtctcattttatgatttggtagcatgtaa |
31881629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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