View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1514_low_5 (Length: 356)
Name: NF1514_low_5
Description: NF1514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1514_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 47547956 - 47547742
Alignment:
| Q |
1 |
gttaaacctttgcggccattagaatcgaatgtctttctcaagcaatatttttctcgcacgctttttc-tttaaccctttaattatgactttttaattgat |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
47547956 |
gttaaacctttgcggccattagaatcgaatgtctttctcaagcaatatttttctcgcacgccttttcctttaaccctttaattataactttttaattgat |
47547857 |
T |
|
| Q |
100 |
caagcgttgaagattagaggaagccagtaaattaactttgtgtgtgacttactcaactcccaccatgttgcattgcattgttaagttgttctttcttttg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47547856 |
caagcgttgaagattagaggaagccagtaaattaactttgtgtgtgacttactcaactcccaccatgttgcattgcattgttaagttgttctttcttttg |
47547757 |
T |
|
| Q |
200 |
gtttattgcacttga |
214 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
47547756 |
gtttattgcacttga |
47547742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 47542390 - 47542214
Alignment:
| Q |
1 |
gttaaacctttgcggccattagaatcgaatgtctttctca---agcaatatttttctcgcacg-----ctttttctttaaccctttaattatgacttttt |
92 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||||||| |||| | |||||||| ||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
47542390 |
gttaaacccttgcgaccattggaatcgaatgtctttctcacaaagcattgtttttctcccacaagtaccttttcctttaaccctttaattatattttttt |
47542291 |
T |
|
| Q |
93 |
aattgatcaagcgttgaagattagaggaagccagtaaattaactttgtgtgtgacttactcaactcccaccatgttgcatt |
173 |
Q |
| |
|
||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47542290 |
aatcgatcaagcgtt----attagatgaagccagttaattaactttgtgtgtgacttactcaactcccaccatgttgcatt |
47542214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 47547667 - 47547618
Alignment:
| Q |
293 |
agttgcagcggagcctatctaggaaaggatcccagcgtgggggtgataga |
342 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47547667 |
agttgcagcggagcctatccaggaaaggatcccagcgtgggggtgataga |
47547618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University