View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1514_low_7 (Length: 333)
Name: NF1514_low_7
Description: NF1514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1514_low_7 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 4567176 - 4566869
Alignment:
| Q |
13 |
atcatctttatatctggaaagtttcacatgcacctgacgtaactaatggacctacaacttattttgattaatatttcatgtcttcacagattaggttgat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4567176 |
atcatctttatatctggaaagtttcacatgcacctgacgtaactaatggacctacaacttattttgattaatatttcatgtcttcacagattaggttgat |
4567077 |
T |
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| Q |
113 |
taggtattatgttatcatattatat-ttaagattatagggcctaaagtttcttatcctcgacaagtatatttgaga-nnnnnnnnnatcaacgtaaactt |
210 |
Q |
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| T |
4567076 |
taggtattatgttatcatattatatgttaagatcctatggcctaaagtttcttatcctcgacaagtataattgagattttttttttacgaaagtaaactt |
4566977 |
T |
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| Q |
211 |
aattcatatcattacttaaaatagaatcaatatgaggaggataaatctcaaagatacggtgactagcccaataacaagccactctaataagaatgtaagc |
310 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||| | ||||||| ||| ||||| |||||||| ||| |
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| T |
4566976 |
aattcatatcattacttaaaatagaatcaatatgaagaggataaatctcaaatatatggtaactaatctaataacatgccgttctaacaagaatgtgagc |
4566877 |
T |
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| Q |
311 |
aatcatgt |
318 |
Q |
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|||||||| |
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| T |
4566876 |
aatcatgt |
4566869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 318
Target Start/End: Original strand, 8670144 - 8670257
Alignment:
| Q |
205 |
aaacttaattcatatcattacttaaaatagaatcaatatgaggaggataaatctcaaagatacggtgactagcccaataacaagccactctaataagaat |
304 |
Q |
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| T |
8670144 |
aaacttaattcatatatttacttaaaatagagtcaatacaaggaagacaaatctcaaagatacggtgactagtccaagaacaggccgccctagtaagagt |
8670243 |
T |
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| Q |
305 |
gtaagcaatcatgt |
318 |
Q |
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| T |
8670244 |
gtgagcaaccatgt |
8670257 |
T |
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Target: scaffold0252 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 13478 - 13395
Alignment:
| Q |
203 |
gtaaacttaattcatatcattacttaaaatagaatcaatatgaggaggataaatctcaaagatacggtgactagcccaataaca |
286 |
Q |
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| T |
13478 |
gtaaacttaattcatatcattacttaaaatatagtcaatacaaggaggacaaatctcaaagacacggtgactagcccaagaaca |
13395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 33583044 - 33582959
Alignment:
| Q |
205 |
aaacttaattcatatcattacttaaaatagaatcaatatgaggaggataaatctcaaagatacggtgactagcccaataacaagcc |
290 |
Q |
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| T |
33583044 |
aaacttaattcatatcattatttaaaatagaatcaatacaagcaggacaaatctcaaatatacgatgactagcccaagaacaagcc |
33582959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 49525024 - 49525105
Alignment:
| Q |
205 |
aaacttaattcatatcattacttaaaatagaatcaatatgaggaggataaatctcaaagatacggtgactagcccaataaca |
286 |
Q |
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| T |
49525024 |
aaacttaatgcatatcattacttaaaatagagtcaatacaaggaggacaaatctcaaaaatatggtgactagtccaagaaca |
49525105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 44655125 - 44655092
Alignment:
| Q |
209 |
ttaattcatatcattacttaaaatagaatcaata |
242 |
Q |
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| T |
44655125 |
ttaattcatatcattacttaaaatagagtcaata |
44655092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 22573085 - 22573137
Alignment:
| Q |
199 |
caacgtaaacttaattcatatcattacttaaaatagaatcaatatgaggagga |
251 |
Q |
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| T |
22573085 |
caacgcaaatttaattcatatcattatttaaaataaagtcaatataaggagga |
22573137 |
T |
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