View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15150_high_1 (Length: 522)
Name: NF15150_high_1
Description: NF15150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15150_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 19 - 503
Target Start/End: Complemental strand, 13974887 - 13974403
Alignment:
| Q |
19 |
catcatcaatagtaaataatggaacatcaacctgcataatttcatgtacgtgactgtacaggttaaaatacaggaaatatatttatacataacnnnnnnn |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13974887 |
catcatcaatagtaaataatggaacatcaacctgcataatttcatgtacgtgactgtacaggttaaaatacaggaaatatatttatacttaacaaaaaaa |
13974788 |
T |
|
| Q |
119 |
cgcgtatcaggagagctgtgcaaatttaccatatcagaatgtttatcatcctttagtccagactggtatccttttgtatcaagagataactggaccccca |
218 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
13974787 |
cgcgtatgaggagagctgtgcaaatttaccatatcagaatgtttatcatcctttagtccagactggtatcctgttgtatcaagagataactggacaccca |
13974688 |
T |
|
| Q |
219 |
atggacaagcatcatcgggtgaaaaattattaagaagccgttcttttaacacggatgattcctgatgcacacaaaaatgtaagttaatacattgatcctg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13974687 |
atggacaagcatcatcgggtgaaaaattattaagaagccgttcttttaacacggatgattcctgatgcacacaaaaatgtaagttaatacattgatcctg |
13974588 |
T |
|
| Q |
319 |
ataaactagtgaaacattaaatgataaataaatagttgttacatttgccggttttcctagactctgcactatcatagtagcaaacgattcatttgactgg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13974587 |
ataaactagtgaaacattaaatgataaataaatagttgttacatttgccggttttcctagactctgcactatcatagtagcaaacgattcatttgactgg |
13974488 |
T |
|
| Q |
419 |
ctttcagttatttttatcgatgaaagtgactttaaagcgtcctcatcatcctcttttgatccataagccttacttggctgcctaa |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13974487 |
ctttcagttatttttatcgatgaaagtgactttaaagcgtcctcatcatcctcttttgatccataagccttacttggctgcctaa |
13974403 |
T |
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