View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15150_high_2 (Length: 348)
Name: NF15150_high_2
Description: NF15150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15150_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 45024949 - 45024667
Alignment:
| Q |
1 |
ttccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcactagtaattcccatctggtcaaaacatttatgcatataata |
100 |
Q |
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| T |
45024949 |
ttccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcactagtaattcccatctgatcaaaacatttatgcatataata |
45024850 |
T |
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| Q |
101 |
taaatgcaatgattactaaataatcctccctctgaattggcatataaacaaatttgggctgaattgtgcatattnnnnnnnnncgagttacaattttctt |
200 |
Q |
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| T |
45024849 |
taaatgcaatgattactatataatcctccctctgaattggcatataaacaaatttggactgaattgtgcatatt--aaaaaaacgagttacaattttatt |
45024752 |
T |
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| Q |
201 |
attataattcattccagcacatgatatgagagtatgttttaattttctgaggcttactagtatgttacattacatgcaaagaaaa |
285 |
Q |
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| T |
45024751 |
attataattcagtccagcacatgattagagagtatgttttaattttctgaggcttacaagtatgttaaattacatgcaaagaaaa |
45024667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30437693 - 30437753
Alignment:
| Q |
1 |
ttccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcact |
61 |
Q |
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|||||| |||||| ||||||| ||||||| || |||||||||||||||||| |||||||| |
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| T |
30437693 |
ttccaaccatatgatactgttgagctccatatgcttgaccacaaaatgtgtctagtgcact |
30437753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 30471806 - 30471858
Alignment:
| Q |
8 |
catatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcac |
60 |
Q |
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||||||||| | || |||||||| |||||||||||||||||| || ||||||| |
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| T |
30471806 |
catatggtatttttgtgctccatatgattgaccacaaaatgtttctagtgcac |
30471858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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