View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15150_high_3 (Length: 321)
Name: NF15150_high_3
Description: NF15150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15150_high_3 |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 185 - 321
Target Start/End: Complemental strand, 9695791 - 9695655
Alignment:
| Q |
185 |
cttcagacttggacttctcagatccttcttcctccgaagcattcttctcagtctaatgcaccaaaattagctcaaatcagcaaacacaagatataaatcc |
284 |
Q |
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| T |
9695791 |
cttcagacttggacttctcagatccttcttcctccgaagcattcttctcagtctaatgcaccaaaattagctcaaatcagcaaacacgagatataaatcc |
9695692 |
T |
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| Q |
285 |
aagtaaaatcagaacacggaaaaatcagagtaacaga |
321 |
Q |
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| T |
9695691 |
aagtaaaatcagaacacggaaaaatcaaagtcacaga |
9695655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 9695975 - 9695905
Alignment:
| Q |
1 |
attattctattgcagttactcctacgcttcttccttcagcaccaccaactttactcctcatcctcctcctg |
71 |
Q |
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| T |
9695975 |
attattctattgcagttaatcctacgcttcttccttcagcaccaccaaccttactcctcatcctcctcctg |
9695905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 321
Target Start/End: Original strand, 30439777 - 30439902
Alignment:
| Q |
196 |
gacttctcagatccttcttcctccgaagcattcttctcagtctaatgcaccaaaattagctcaaatcagcaaacacaagatataaatccaagtaaaatca |
295 |
Q |
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| T |
30439777 |
gacttatcaaatccttcttcctctgaagcattattctcggtctaagacatcaaaattagttcaaatcagcaaaaaggtaatataaatccaagtaaaataa |
30439876 |
T |
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| Q |
296 |
gaacacggaaaaatcagagtaacaga |
321 |
Q |
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| T |
30439877 |
gaacagtaaaaattcacagtaacaga |
30439902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 186 - 293
Target Start/End: Original strand, 14700 - 14807
Alignment:
| Q |
186 |
ttcagacttggacttctcagatccttcttcctccgaagcattcttctcagtctaatgcaccaaaattagctcaaatcagcaaacacaagatataaatcca |
285 |
Q |
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||||||||| ||||| | |||||||||||| |||||||||||||||||||||||| || ||||||||| ||||||||||||| | ||||||||||| |
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| T |
14700 |
ttcagacttagacttatgagatccttcttcttccgaagcattcttctcagtctaagacatcaaaattagttcaaatcagcaaaaagttaatataaatcca |
14799 |
T |
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| Q |
286 |
agtaaaat |
293 |
Q |
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| T |
14800 |
agtaaaat |
14807 |
T |
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