View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15151_low_2 (Length: 426)
Name: NF15151_low_2
Description: NF15151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15151_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 6796029 - 6795622
Alignment:
| Q |
1 |
tgtttagtttatttaaacatatcagtttcatttaaagnnnnnnnnngtgtcactaaatataagtctatttttaaattactagacatatttattaattttt |
100 |
Q |
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| T |
6796029 |
tgtttagtttatttaaacatatcagtttcatttaaagaaaaaacaagtgtcactaaatataagtctatttttaaattactagacatatttattaattttt |
6795930 |
T |
|
| Q |
101 |
acaaaaattatccctatataatttaatacctgttggtgacattgtttaactaaattattaattgaagagaaattttggaaaatcaatacaaaaaatggac |
200 |
Q |
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| T |
6795929 |
acaaaaattatccctatataatttaatacctgttagtgacattgtttaactaaattattaattgaagagaaattttggaaaatcaatacaaaaaatggac |
6795830 |
T |
|
| Q |
201 |
ttttgggcaccctaatccaccagtttgtcattctaaaagcatcgcctaacttcttcctaaaagtgcagtgtacaaattaaagaccagtatgttgatgaga |
300 |
Q |
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| T |
6795829 |
ttttgggcaccctaatccaccagtttgtcattctaaaagtatcgcctaacttcttcctaaaagtgcagtgtacaaattaaagaccagtatgttgatgaga |
6795730 |
T |
|
| Q |
301 |
tctcatcagatattaaaaagaattgttattttgttatcgaaggtatcgaatggtattatttgatgagcaaacggtaaacagaatttgtacctggctcttg |
400 |
Q |
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| T |
6795729 |
tctcatcagatattaaacagaattgttattttgttatcgaaggtatcgaatggtattatttgatgagcaaacggtaaacagaatttgtacctggctcttg |
6795630 |
T |
|
| Q |
401 |
ttccatat |
408 |
Q |
| |
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|||||||| |
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| T |
6795629 |
ttccatat |
6795622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 6727379 - 6727319
Alignment:
| Q |
140 |
cattgtttaactaaattattaattgaagagaaattttggaaaatcaatacaaaaaatggac |
200 |
Q |
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| T |
6727379 |
cattgtttaactaaaatattaattgaagagaagctttggaacatcaatacaccaaatggac |
6727319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 6715227 - 6715164
Alignment:
| Q |
225 |
ttgtcattctaaaagcatcgcctaacttcttcctaaaagtgcagtgtac--aaattaaagacca |
286 |
Q |
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|||||||||||||||||| |||||| |||||||||| |||||| | ||| ||||||||||||| |
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| T |
6715227 |
ttgtcattctaaaagcattgcctaatttcttcctaagagtgcactatacaaaaattaaagacca |
6715164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 375 - 408
Target Start/End: Complemental strand, 6715109 - 6715076
Alignment:
| Q |
375 |
taaacagaatttgtacctggctcttgttccatat |
408 |
Q |
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| T |
6715109 |
taaacagaatttgtacctggctcttattccatat |
6715076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 36501305 - 36501266
Alignment:
| Q |
54 |
taaatataagtctatttttaaattactagacatatttatt |
93 |
Q |
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|||||||||||||||||||||||||||||| | ||||||| |
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| T |
36501305 |
taaatataagtctatttttaaattactagatacatttatt |
36501266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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