View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15151_low_3 (Length: 347)
Name: NF15151_low_3
Description: NF15151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15151_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 23094825 - 23094568
Alignment:
| Q |
1 |
tatatctcactaaatcacaatacaannnnnnngtcataaatatatattatccaaaatatcaaatagaattttgtccaccaaatatctgacaaaatttatt |
100 |
Q |
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||||||||||||||||||||||| | |||| ||||| ||||| ||||||||| |||||||||||| |||| ||||||| |||| ||||||||| |
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| T |
23094825 |
tatatctcactaaatcacaatactatttttt-gtcacaaatacatattgtccaaaatacgaaatagaattttatccatcaaatatttgacgaaatttatt |
23094727 |
T |
|
| Q |
101 |
ctataccataaaaatttattccgtgtcattttatcttgtattattttatctgatatatacctttctatcaccttctagtagatcaaacacactcaaatac |
200 |
Q |
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||||||||||||||||| || |||||||||| | |||||||||||| || ||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
23094726 |
ctataccataaaaatttgttatgtgtcattttgt-ttgtattattttgtccgatatatacttttc-atcaccttctagtagatcaaacacactcaaatac |
23094629 |
T |
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| Q |
201 |
cttcttaaggaaaacacacttaaggattgattttgagctctctaggacgagagaaattcaa |
261 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23094628 |
cttcttaaagaaaacacacttaaggattgattttgagctctctaggacgagagaaattcaa |
23094568 |
T |
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