View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15152_low_3 (Length: 376)
Name: NF15152_low_3
Description: NF15152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15152_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 9524350 - 9524013
Alignment:
| Q |
18 |
gataattagcaaattgttgaatgcgtcataatagtatactgtgtaactgaaatcatttttcaataaaactaaaaactacataagctaagtactaaagaat |
117 |
Q |
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| T |
9524350 |
gataattagcaaattgttgaatgcgtcataatagtatactgtgtaactgaaatcatttttcaataaaactaaaaactacataa-------actaacgaat |
9524258 |
T |
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| Q |
118 |
gtgatgtcgtgtattgtgataaacctttcgccgttgcaagaagttcttctctgcttatcccaacagcatgagacatgtcctagtaaataagaacaattag |
217 |
Q |
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| T |
9524257 |
gtgatgtcgtgtattgtgataaacctttcgccgttgcaagaagttcttctctgcttctcccaacagcatgagacatgtcctagtaaataagaacaattag |
9524158 |
T |
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| Q |
218 |
gcatttaaaagaactttatatgaacaaatatgataagaagcactaattgaagcttcattcgaagcctatcataccggaagagggaagactggagacttca |
317 |
Q |
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| T |
9524157 |
-catttaaaagaactttatatgaacaaatatgataagaagtactaattgaagcttcattcgaagcctatcataccggaagagggaagactggagagttca |
9524059 |
T |
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| Q |
318 |
agtaaaacttcctgtagtgttccatgcatgcctctttgttcttagt |
363 |
Q |
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| T |
9524058 |
agtaaaacttcatgtagtgttccatgcatgcctctttgttcttagt |
9524013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 160 - 360
Target Start/End: Complemental strand, 9496657 - 9496458
Alignment:
| Q |
160 |
gttcttctctgcttatcccaacagcatgagacatgtcctagtaaataagaacaattaggcatttaaaagaactttatatgaacaaatatgataagaagca |
259 |
Q |
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| T |
9496657 |
gttcttctctgtttttcccaacaacatgcgacatgtcctagtaaataagaatggtgag-catttaaaatatctttatataaacgaatatgataagaagca |
9496559 |
T |
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| Q |
260 |
ctaattgaagcttcattcgaagcctatcataccggaagagggaagactggagacttcaagtaaaacttcctgtagtgttccatgcatgcctctttgttct |
359 |
Q |
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| T |
9496558 |
ctgattgcagcttcattcaaagcctgatataccggaagagggaagaacggggagtttaagtacacattcctatagtgttctatgcatgcttctttgttct |
9496459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 153 - 360
Target Start/End: Original strand, 23045152 - 23045358
Alignment:
| Q |
153 |
gcaagaagttcttctctgcttatcccaacagcatgagacatgtcctagtaaataagaacaattaggcatttaaaagaactttatatgaacaaatatgata |
252 |
Q |
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| T |
23045152 |
gcaagaagttcttccctactttttccaacaacatgagacatgtcctagtaaataagaacgatta-gtatttaaaatacatttaaatgaacgaatatgata |
23045250 |
T |
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| Q |
253 |
agaagcactaattgaagcttcattcgaagcctatcataccggaagagggaagactggagacttcaagtaaaacttcctgtagtgttccatgcatgcctct |
352 |
Q |
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|||| ||| ||| ||| ||||| ||||| | ||||||||||||||||||| ||||| | |||||| | |||| |||||||| ||||||||||| |
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| T |
23045251 |
agaaacaccgatttcagcgtcatttgaagcatctcataccggaagagggaagcacggagagtccaagtacacaatcctatagtgttcagtgcatgcctct |
23045350 |
T |
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| Q |
353 |
ttgttctt |
360 |
Q |
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|||||||| |
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| T |
23045351 |
ttgttctt |
23045358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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