View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15153_high_1 (Length: 444)
Name: NF15153_high_1
Description: NF15153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15153_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 2 - 426
Target Start/End: Complemental strand, 28174391 - 28173968
Alignment:
| Q |
2 |
tgtttctcttgcattgattcgtctaagattgacgagaggtgatgccggaaagtaatgctatcatcaggtcttcgaatttgatcagccgcggcgagaaaag |
101 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28174391 |
tgtttctcttgcattgattcgtctaagattgacaagaggtgatgccggaaagtaatgctatcatcaggtcttcgaatttggtcagccgcggcgagaaaag |
28174292 |
T |
|
| Q |
102 |
ccgattcatggtataaacttaaaattgggctaaggatacacccaatcttaaaaattcatatgcgtctgatgtaccccatgagtttgaagttaatgtgcat |
201 |
Q |
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| T |
28174291 |
ccgattcagggtataaacttaaaattgggctaaggatacacccaatcttgaaaattcatatgcgtctgatgtaccccatcagtttgaagttaatgtgcat |
28174192 |
T |
|
| Q |
202 |
ataatataaaaggagacaaaaagaccaaagaaagtatgttattagacaaccaatatcccaattgaactattgatcaagtttttgttatacatacaaacat |
301 |
Q |
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| T |
28174191 |
ataatataacaggagacaaaaagaccaaagaaagtatgttattagacaaccaatatcccaattgaactattgatcaagtttttgttatacatacaaacat |
28174092 |
T |
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| Q |
302 |
aacataggattgcttttgttatttgattataatgccactaatcaacttacttggatataagtaaagctcatgtcataatttctcctttttaggttaaaca |
401 |
Q |
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| T |
28174091 |
aacataggattgcttttgttatttgattataatgccactaatcaacttactt-gatataagtaaagctcatgtcataatttctcctttttaggttaaaca |
28173993 |
T |
|
| Q |
402 |
tgtcacgacccacctttgagccatg |
426 |
Q |
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| T |
28173992 |
tgtcacgacccacctttgagccatg |
28173968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 52 - 250
Target Start/End: Complemental strand, 28161402 - 28161204
Alignment:
| Q |
52 |
agtaatgctatcatcaggtcttcgaatttgatcagccgcggcgagaaaagccgattcatggtataaacttaaaattgggctaaggatacacccaatctta |
151 |
Q |
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||||||| |||| || | |||| |||||||||||| ||||||| | ||||| ||| ||||||||||||||| ||| ||||||||||| |||||||| |
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| T |
28161402 |
agtaatgttatcttcggttcttggaatttgatcagttgcggcgacagaagccaatttggggtataaacttaaaactggactaaggatacagccaatcttg |
28161303 |
T |
|
| Q |
152 |
aaaattcatatgcgtctgatgtaccccatgagtttgaagttaatgtgcatataatataaaaggagacaaaaagaccaaagaaagtatgttattagacaa |
250 |
Q |
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||| || ||||| ||||||||||| || || ||||| |||||||||||||||||||| |||| ||||||||||||||| ||||| |||||||||||| |
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| T |
28161302 |
aaattttctatgcttctgatgtaccgaattagcttgaaattaatgtgcatataatataacaggaaacaaaaagaccaaaggaagtaagttattagacaa |
28161204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 136 - 281
Target Start/End: Complemental strand, 28177292 - 28177144
Alignment:
| Q |
136 |
gatacacccaatcttaaaaattcatatgcgtctgatgtaccccatgagtttgaagttaatgtgcatataatataaaaggagacaaaaagacca---aaga |
232 |
Q |
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|||||| |||||||| ||| || |||||| |||| |||||| || || ||||| |||||||||||||||||||| |||||||||||||| || |||| |
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| T |
28177292 |
gatacagccaatcttgaaattttatatgcttctgttgtaccgaattagcttgaaattaatgtgcatataatataacaggagacaaaaagagcaaagaaga |
28177193 |
T |
|
| Q |
233 |
aagtatgttattagacaaccaatatcccaattgaactattgatcaagtt |
281 |
Q |
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|||| |||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
28177192 |
aagtgtgttattagacaaccaatatcctaattgaaccattgatcaagtt |
28177144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 28169204 - 28169127
Alignment:
| Q |
133 |
aaggatacacccaatcttaaaaattcatatgcgtctgatgtaccccatgagtttgaagttaatgtgcatataatataa |
210 |
Q |
| |
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|||||||||||||||||| ||| ||||||||| ||||||||| ||||| || ||||| |||||||||||||||||||| |
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| T |
28169204 |
aaggatacacccaatcttgaaatttcatatgcttctgatgtatcccatcagcttgaaattaatgtgcatataatataa |
28169127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 28158635 - 28158564
Alignment:
| Q |
133 |
aaggatacacccaatcttaaaaattcatatgcgtctgatgtaccccatgagtttgaagttaatgtgcatata |
204 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| ||||||||| ||||| || ||||| |||||||| ||||| |
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| T |
28158635 |
aaggatacacccaatcttgaaatttcatatgcttctgatgtatcccatcagcttgaaattaatgtggatata |
28158564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 345
Target Start/End: Complemental strand, 28147483 - 28147440
Alignment:
| Q |
302 |
aacataggattgcttttgttatttgattataatgccactaatca |
345 |
Q |
| |
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| T |
28147483 |
aacataggattgtttttgttatttgattttaatgccattaatca |
28147440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 28160443 - 28160384
Alignment:
| Q |
209 |
aaaaggagacaaaaagaccaaagaaagtatgttattagacaaccaatatcccaattgaac |
268 |
Q |
| |
|
||||| |||||||||||| |||| |||| |||||||||||| |||||||| |||||||| |
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| T |
28160443 |
aaaagtagacaaaaagacgaaaggaagtgagttattagacaatcaatatcctaattgaac |
28160384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 28169061 - 28169004
Alignment:
| Q |
287 |
tatacatacaaacataacataggattgcttttgttatttgattataatgccactaatca |
345 |
Q |
| |
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|||||||||| ||| | |||||||| | ||||||||||||||||||||||||| ||||| |
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| T |
28169061 |
tatacatacataca-agcataggatcgtttttgttatttgattataatgccaccaatca |
28169004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 28179051 - 28178982
Alignment:
| Q |
200 |
atataatataaaaggagacaaaa-agaccaaagaaagtatgttattagacaaccaatatcccaattgaac |
268 |
Q |
| |
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||||||||||| | ||||||||| | |||||||||||| |||||||||||| ||||||| |||||||| |
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| T |
28179051 |
atataatataacaagagacaaaataaaccaaagaaagtgagttattagacaatcaatatcagaattgaac |
28178982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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