View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15153_low_3 (Length: 296)
Name: NF15153_low_3
Description: NF15153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15153_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 194 - 291
Target Start/End: Complemental strand, 4071786 - 4071689
Alignment:
| Q |
194 |
ttgtttgttccacaagcaaggtgcaattttccctgaaatttcaaatgcccttgttttcaatttgtcctcatcatcttcttctgtgaaatccctttgat |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4071786 |
ttgtttgttccacaagcaaggtgcaattttccctgaaatttcaaatgcccttgttttcaatttgtcctcatcatcttcttctgtgaaatccctttgat |
4071689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 4071979 - 4071901
Alignment:
| Q |
1 |
accaattctgttccatatttttcggtattgaaaaacctccacccttcaattatcaacggatcttacacatattcagttg |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4071979 |
accaattctgttccatatttttcggtattgaaaaacctccacccttcaattatcaacggatcttacacatattcagttg |
4071901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University