View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15153_low_4 (Length: 289)
Name: NF15153_low_4
Description: NF15153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15153_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 25 - 275
Target Start/End: Original strand, 53670 - 53920
Alignment:
| Q |
25 |
tggaagttaacatgtgcaagatttatatgaactgcagatatatcccacatcagtaagaaccaccggtgtcggagtcgcaagctcagtgggtagaattggt |
124 |
Q |
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| T |
53670 |
tggaagttaacatgtgcaagatttatatgaactgcagatatatcccacatcagtaagaaccaccggtgtcggagtcgcaagctcagtgggtagaattggt |
53769 |
T |
|
| Q |
125 |
ggaatgttatgtccattggtagcagtgggtttagtacatggatgtcatcaaactgcagctgtccttctgtttgtaattgtagctcttgtttcaggaatat |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
53770 |
ggaatgttatgtccattggtagcagtgggtttagtacatggatgtcatcaaactgcagctgtccttctgtttataattgtagctcttgtttcaggaatat |
53869 |
T |
|
| Q |
225 |
gtgttgtgttctttccgtttgagaccatgggccaagaactgcaagatactg |
275 |
Q |
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| T |
53870 |
gtgttgtgttctttccgtttgagaccatgggccaagaactgcaagatactg |
53920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 44902524 - 44902387
Alignment:
| Q |
98 |
gtcgcaagctcagtgggtagaattggtggaatgttatgtccattggtagcagtgggtttagtacatggatgtcatcaaactgcagctgtccttctgtttg |
197 |
Q |
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| T |
44902524 |
gtcgcaagctcaatgggtagaattggtggaatgttatgttcattgctagcggtgggtttagtacatggatgtcatgaaactgcaactgttcttttgtttt |
44902425 |
T |
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| Q |
198 |
taattgtagctcttgtttcaggaatatgtgttgtgttctt |
237 |
Q |
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| T |
44902424 |
taattgtagctc--atttcaggaagatgtgttatgttctt |
44902387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 5160685 - 5160822
Alignment:
| Q |
98 |
gtcgcaagctcagtgggtagaattggtggaatgttatgtccattggtagcagtgggtttagtacatggatgtcatcaaactgcagctgtccttctgtttg |
197 |
Q |
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|||||||||||| |||||||||||||||||||||||| | ||||| |||| |||||||| ||||||||||||||| ||||||||||||| ||| ||||| |
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| T |
5160685 |
gtcgcaagctcaatgggtagaattggtggaatgttatattcattgctagcggtgggtttcgtacatggatgtcatgaaactgcagctgttcttttgtttt |
5160784 |
T |
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| Q |
198 |
taattgtagctcttgtttcaggaatatgtgttgtgttctt |
237 |
Q |
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| T |
5160785 |
taattgtagctc--gtttcaggaagatgtgttatgttctt |
5160822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 143 - 268
Target Start/End: Original strand, 38759481 - 38759606
Alignment:
| Q |
143 |
gtagcagtgggtttagtacatggatgtcatcaaactgcagctgtccttc-tgtttgtaattgtagctcttgtttcaggaatatgtgttgtgttctttccg |
241 |
Q |
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||||| |||||||||| ||||||||||||||||||| || |||| || |||||| || ||||||||||||||||||||| |||||| |||||||||| |
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| T |
38759481 |
gtagcggtgggtttagaacatggatgtcatcaaacttgagttgtcttttatgtttg-aagtgtagctcttgtttcaggaatttgtgttatgttctttccc |
38759579 |
T |
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| Q |
242 |
tttgagaccatgggccaagaactgcaa |
268 |
Q |
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| T |
38759580 |
tttgagaccatgggccaagaactgcaa |
38759606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 22689426 - 22689488
Alignment:
| Q |
202 |
tgtagctcttgtttcaggaatatgtgttgtgttctttccgtttgagaccatgggccaagaact |
264 |
Q |
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| T |
22689426 |
tgtagctcttgtttcaggaatatgtgttatgttctttccctttgagaccatgggccaagaact |
22689488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 149 - 268
Target Start/End: Complemental strand, 3931885 - 3931766
Alignment:
| Q |
149 |
gtgggtttagtacatggatgtcatcaaactgcagctgtccttc-tgtttgtaattgtagctcttgtttcaggaatatgtgttgtgttctttccgtttgag |
247 |
Q |
| |
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|||||||||| ||||| |||||||||||| || |||| || |||||| || |||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
3931885 |
gtgggtttagaacatgagtgtcatcaaacttgagttgtcttttatgtttg-aagtgtagctcttgtttcaggaatatgtgttatgttctttccctttgag |
3931787 |
T |
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| Q |
248 |
accatgggccaagaactgcaa |
268 |
Q |
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| T |
3931786 |
atcatgggccaagaactgcaa |
3931766 |
T |
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