View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15154_low_1 (Length: 329)
Name: NF15154_low_1
Description: NF15154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15154_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 26 - 324
Target Start/End: Original strand, 2055963 - 2056261
Alignment:
| Q |
26 |
ttctgcacttgaacattacaaaatttgaactgagcaatgtggtagaaaaaacattagctcgtataaataattgtcagatctttgtgagttggtttcatca |
125 |
Q |
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| T |
2055963 |
ttctgcacttgaacattacaaaatttgaactgagcaatgtggtagaaaaaacattagctcgtataaataattgtcagatctttgtgagttggtttcatca |
2056062 |
T |
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| Q |
126 |
attccacttgattgtgaatttgtgatatgaactcataaacatgatgtggtttttatttcatccaatggatgaattacaatgtataaacattcacttattg |
225 |
Q |
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| T |
2056063 |
attccacttgattgtgaatttgtgatatgaactcataaacatgatgtggtttttatttcatccaatggatgaattacaatgtataaacattcacttattg |
2056162 |
T |
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| Q |
226 |
aacaagatgttttatttatcataaccctccagtttcgagagaaaggttccatagtaattcagagttcagttgagaggtaagtaaagtataaccaagaat |
324 |
Q |
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| T |
2056163 |
aacaaaatgttttatttatcataaccctccagtttggagagaaaggttccatagtaattcagagttcagttgagaggtaagtaaagtataaccaagaat |
2056261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 38 - 310
Target Start/End: Original strand, 2052115 - 2052376
Alignment:
| Q |
38 |
acattacaaaatttgaactgagcaatgtggtagaaaaaacattagctcgtataaataattgtcagatctttgtgagttggtttcatcaattccacttgat |
137 |
Q |
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| T |
2052115 |
acattacaagatttgaactaagcaatgtggcagaaaaaatattagctc--ataaataattgacagatctttgtgagttggtatcatc------------- |
2052199 |
T |
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| Q |
138 |
tgtgaatttgtgatatgaactcataaacatgatgtggtttttatt--tcatccaatggatgaattacaatgtataaacattcacttattgaaca-agatg |
234 |
Q |
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| T |
2052200 |
tttgtaattgtgatatgaactcataaatatgatgtgtttttttttcttcatgcaatagatgaattacaaggtataaacattcacttattgaacacagata |
2052299 |
T |
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| Q |
235 |
ttttatttatcataaccctccagtttcgagagaaaggttcca-tagtaattcagagttcagttgagaggtaagtaaa |
310 |
Q |
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| T |
2052300 |
ttttatttatcataaccctccagtttcgagagaaaggttccattaataattcagagttcggttggaaggtaagtaaa |
2052376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 2035045 - 2035102
Alignment:
| Q |
170 |
tgtggtttttatttcatccaatggatgaattacaatgtataaacattcacttattgaa |
227 |
Q |
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| T |
2035045 |
tgtggtttctatttcatgctatggatgaattaaaaagtataaacattcacttattgaa |
2035102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 2048356 - 2048404
Alignment:
| Q |
179 |
tatttcatccaatggatgaattacaatgtataaacattcacttattgaa |
227 |
Q |
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| T |
2048356 |
tatttcatgctatggatgaattacaaagtataaacattcacctattgaa |
2048404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 2059355 - 2059399
Alignment:
| Q |
179 |
tatttcatccaatggatgaattacaatgtataaacattcacttat |
223 |
Q |
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| T |
2059355 |
tatttcatgctatggatgaattacaaagtataaacattcacttat |
2059399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 2039142 - 2039200
Alignment:
| Q |
169 |
atgtggtttttatttcatccaatggatgaattacaatgtataaacattcacttattgaa |
227 |
Q |
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| T |
2039142 |
atgtgatttctatttcatgctatggatgaattacaaagcataaacattcacttgttgaa |
2039200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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