View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15154_low_2 (Length: 283)
Name: NF15154_low_2
Description: NF15154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15154_low_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 33659279 - 33659013
Alignment:
| Q |
17 |
aagtgattatgaatttcaccgttaaacacttaaaaataatgaaattattccatatcaaattattacccttgtatactacatcaaccacagcttccctaaa |
116 |
Q |
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| T |
33659279 |
aagtaattatgagtttcaccgttaaacacttaaaaataatgaaattattccatatcaaattattacccttgtatactacatcaaccacagcttccctaaa |
33659180 |
T |
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| Q |
117 |
agtaaatgagattatacttgccatcctcagactttccaatattacctacaatacaagatcttgatgagaaatattttcatgaagttgctttcaatataaa |
216 |
Q |
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| T |
33659179 |
agtaaatgagattatacttgccatcctcagactttccaatattacctacaatacaagatcttgatgagaaatattttgatgaagttgctttcaacataaa |
33659080 |
T |
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| Q |
217 |
acaatagtagtgtgtgtgtatcatagcataccctatgagtaataggcatatttctagtttgacccca |
283 |
Q |
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| T |
33659079 |
acaatagtagtgtgtgtgtatcatagcataccctatgagtaataggcatatttctagtttgacccca |
33659013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 33699958 - 33699865
Alignment:
| Q |
73 |
aaattattacccttgtatactacatcaaccacagcttccctaaaagtaaatgagattatacttgccatcctcagactttccaatattacctaca |
166 |
Q |
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| T |
33699958 |
aaattcttacccttgtatactacatcaaccacagcttccctaaaagtaaatgatatgatgcttgacatccttaggctttccaatattacctaca |
33699865 |
T |
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