View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15155_high_1 (Length: 534)
Name: NF15155_high_1
Description: NF15155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15155_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 33700184 - 33699801
Alignment:
| Q |
17 |
aatagaatacctcaaatcttgatgggtcaaaattatgaggagcagggtagaattctggattatgatggatgtttctgaacagtggcattactttccaacc |
116 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33700184 |
aatagtatacctcaaatcttgatgggtcaaaattatgaggagcagggtagaattctggattatgatggatgtttctgaacagtggcattactttccaacc |
33700085 |
T |
|
| Q |
117 |
ctttggtattaaatatccttaatagttgttgcatcaaagaacattttagaaattaatcatgaagaaaatagtaatagcttttgaaaatgaaatttcctat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33700084 |
ctttggtattaaatatccttaatagttgttgcatcaaagaactttttagaaattaatcatgaagaaaatagtaatagcttttgaaaatgaaatttcttat |
33699985 |
T |
|
| Q |
217 |
aaatgtacaaaagattagtccgtctaaaattcttaccctggtatactacatcaaccacagcttccctaaaagtaaatgatatgatgcttgacatccttag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33699984 |
aaatgtacaaaagattagtccgtctaaaattcttacccttgtatactacatcaaccacagcttccctaaaagtaaatgatatgatgcttgacatccttag |
33699885 |
T |
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| Q |
317 |
gctttccaatattacctacacaatacaagttatttactagctacttaatgtactcatgaagctgcattcaaattaaaagaagta |
400 |
Q |
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| T |
33699884 |
gctttccaatattacctacacaatacaagttatttactagctacttaatgtactcatgaagctgcattcaaattaaaagaagta |
33699801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 33659446 - 33659295
Alignment:
| Q |
23 |
atacctcaaatcttgatgggtcaaaattatgaggagcagggtagaattctggattatgatggatgtttctgaacagtggcattactttccaaccctttgg |
122 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
33659446 |
atacctcaaaccttgatgggtcaaaattgtgaggagcagggtagaagtctggattgtggtggatgtttctgaacagaggcattactttccaaccttttgg |
33659347 |
T |
|
| Q |
123 |
tattaaatatccttaatagttgttgcatcaaagaacattttagaaattaatcatg |
177 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
33659346 |
tattaaatatccttaata---gttgcatcaaagaacattttagaaaataatcatg |
33659295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 243 - 336
Target Start/End: Complemental strand, 33659223 - 33659130
Alignment:
| Q |
243 |
aaattcttaccctggtatactacatcaaccacagcttccctaaaagtaaatgatatgatgcttgacatccttaggctttccaatattacctaca |
336 |
Q |
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| T |
33659223 |
aaattattacccttgtatactacatcaaccacagcttccctaaaagtaaatgagattatacttgccatcctcagactttccaatattacctaca |
33659130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 473 - 534
Target Start/End: Complemental strand, 33699729 - 33699668
Alignment:
| Q |
473 |
ccataccttgtgagttagtggcatattttttatctgaccccatgtcaatggaatcttccctc |
534 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33699729 |
ccataccttgtgagttagtggcatattttttatctgaccccatgtcaatggaatcttccctc |
33699668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 5861712 - 5861608
Alignment:
| Q |
23 |
atacctcaaatcttgatgggtcaaaattatgaggagcagggtagaattctggattatgatggatgtttctgaacagtggcattactttccaaccctttgg |
122 |
Q |
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|||||||||||||||| |||| || |||||||| | || | ||||| ||||||||||| || |||||||||||||||||| ||||||| || ||||| |
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| T |
5861712 |
atacctcaaatcttgaagggttgaatttatgaggctctggaaaaaattcaggattatgatgaatatttctgaacagtggcattgctttccacccttttgg |
5861613 |
T |
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| Q |
123 |
tatta |
127 |
Q |
| |
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|||| |
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|
| T |
5861612 |
gatta |
5861608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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