View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15155_high_2 (Length: 458)

Name: NF15155_high_2
Description: NF15155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15155_high_2
NF15155_high_2
[»] chr5 (6 HSPs)
chr5 (7-442)||(1744177-1744612)
chr5 (16-442)||(1738843-1739269)
chr5 (127-442)||(1759999-1760320)
chr5 (210-439)||(1724448-1724677)
chr5 (243-319)||(1763490-1763566)
chr5 (7-83)||(1724247-1724323)
[»] chr3 (4 HSPs)
chr3 (130-312)||(3156912-3157094)
chr3 (121-387)||(3167167-3167442)
chr3 (203-442)||(2022801-2023049)
chr3 (102-312)||(3139198-3139408)
[»] chr8 (2 HSPs)
chr8 (130-312)||(23852062-23852244)
chr8 (130-312)||(23856629-23856812)
[»] chr7 (2 HSPs)
chr7 (203-277)||(9012087-9012161)
chr7 (352-442)||(9011910-9012000)


Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 7 - 442
Target Start/End: Original strand, 1744177 - 1744612
Alignment:
Q  7 tcgaagaatatccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgattcatagatccaaggtgtcggagca 106  Q
    ||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1744177 tcgaacaagatccatcctcaaactcaaatctcaacaagcctattgatttcgtgaaactgtctaaagatgatttgattcacagatccaaggtgtcggagca 1744276  T
Q  107 caaatcttttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaacgatgagaacaagagtgaagagagaaaaatagat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  1744277 caaatcttttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaacgatgagaacaagagtgaagagaaaaaaatggat 1744376  T
Q  207 tcaaggtctttttcatgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  1744377 tcaaggtctttttcatgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataagacggaacgtgcattacaaa 1744476  T
Q  307 agcaacttaaacagaagtatgtattaggtttagggcagcctcttcttaacccttattttagttatccaaacactctttttaatccccctaattatggggc 406  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  1744477 agcaacttaaacagaagtacgtattaggtttagagcagcctcttcttaacccttattttagttatccaaacactctttttacaccccctaattatggggc 1744576  T
Q  407 actcggtgttagaatggaatctatgattcaaaaacc 442  Q
    ||||||||||||||||||||||||||||||||||||    
T  1744577 actcggtgttagaatggaatctatgattcaaaaacc 1744612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 442
Target Start/End: Original strand, 1738843 - 1739269
Alignment:
Q  16 atccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgattcatagatccaaggtgtcggagcacaaatcttt 115  Q
    ||||||| |||||||| ||||||||||||||| ||||||| |||||||| |||||||| |||| |||||| |  ||||||||||| ||||||||| ||||    
T  1738843 atccatcttcaaactctaatttcaacaagcctcttgattttgtgaaactatctaaagaggattcgattcacatgtccaaggtgtcagagcacaaaccttt 1738942  T
Q  116 tagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaacgatgagaacaagagtgaagagagaaaaatagattcaaggtct 215  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||| |||| |||||| ||||||||| ||    
T  1738943 tagcactatgcaagttggttcatcatctcgttttccaaataacaacaataaagggaaagatgagaacaagaatgaggagaaaaaaatggattcaaggact 1739042  T
Q  216 ttttcatgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagcaactta 315  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  1739043 ttttcatgcttattttgcaagggaaaattttctacttcgcaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcgttgcaaaagcaactta 1739142  T
Q  316 aacagaagtatgtattaggtttagggcagcctcttcttaacccttattttagttatccaaacactctttttaatccccctaattatggggcactcggtgt 415  Q
    |||| | ||||| ||||||||||||||| ||||||||||||||||||||| | || ||||||||| ||||||  ||||||||||| ||||||||||||||    
T  1739143 aacaaaggtatgaattaggtttagggcaacctcttcttaacccttatttttgctacccaaacactttttttacaccccctaattacggggcactcggtgt 1739242  T
Q  416 tagaatggaatctatgattcaaaaacc 442  Q
    |||||||||||||||||||||||||||    
T  1739243 tagaatggaatctatgattcaaaaacc 1739269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 127 - 442
Target Start/End: Original strand, 1759999 - 1760320
Alignment:
Q  127 aagttggttcatcatcttgttttccaaataacaacaataaaggaaacgatga------gaacaagagtgaagagagaaaaatagattcaaggtctttttc 220  Q
    ||||||||||||||||| |||||||||||||||||||  |||  || |||||      ||||||||   |||||| |||  | |||||||||||||||||    
T  1759999 aagttggttcatcatctggttttccaaataacaacaaagaagagaaagatgaaaattagaacaagaacaaagagaaaaatttggattcaaggtctttttc 1760098  T
Q  221 atgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagcaacttaaacag 320  Q
    ||| |||||||||||| |||||||| |||||||||| ||||| || || |||||||| ||| ||||||| |||||||||||| ||||||||| ||||||     
T  1760099 atgtttattttgcaagagaaaatttactacttcacaggcgttgggagggcaccaaaatgcttataaggcggaacgtgcattagaaaagcaacgtaaacaa 1760198  T
Q  321 aagtatgtattaggtttagggcagcctcttcttaacccttattttagttatccaaacactctttttaatccccctaattatggggcactcggtgttagaa 420  Q
    | ||| | ||||||||||||| | |||| | ||||||||||||||||||||||| | ||| ||||||  ||| |  ||||| |||||||||||||| |||    
T  1760199 aggtaggaattaggtttagggtaacctcattttaacccttattttagttatccagatactttttttacaccctcgtattatagggcactcggtgttggaa 1760298  T
Q  421 tggaatctatgattcaaaaacc 442  Q
    ||||| ||||||| ||||||||    
T  1760299 tggaacctatgatccaaaaacc 1760320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 210 - 439
Target Start/End: Original strand, 1724448 - 1724677
Alignment:
Q  210 aggtctttttcatgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagc 309  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||||||| ||||||    
T  1724448 aggtctttttcatgcttattttgcaagagaaaattttctacttcacaggcgttaggagggcaccaaaatgctcataaggcagaacgtgcattaaaaaagc 1724547  T
Q  310 aacttaaacagaagtatgtattaggtttagggcagcctcttcttaacccttattttagttatccaaacactctttttaatccccctaattatggggcact 409  Q
    ||| |||||  | |||||  |||||||||||  | ||||   |||||| |||||||||||||||||| |   ||||||   ||||| ||||| ||  |||    
T  1724548 aacgtaaactaaggtatgatttaggtttaggagaacctcactttaacctttattttagttatccaaatagcttttttacatccccttattatcggaaact 1724647  T
Q  410 cggtgttagaatggaatctatgattcaaaa 439  Q
    ||| |||||| |||||||||||||||||||    
T  1724648 cggcgttagagtggaatctatgattcaaaa 1724677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 1763566 - 1763490
Alignment:
Q  243 ttttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagcaacttaaaca 319  Q
    ||||||||||||||  ||||||| || || ||||| ||||||||||| |||| ||||||| ||||||||| ||||||    
T  1763566 ttttctacttcacatacgttaggagggcatcaaaaagctcataaggcggaacatgcattagaaaagcaacgtaaaca 1763490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 1724247 - 1724323
Alignment:
Q  7 tcgaagaatatccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgatt 83  Q
    ||||| || |||||||||||||||| |||| ||||||||||  |||||  ||||| || || |||||||||| ||||    
T  1724247 tcgaacaagatccatcctcaaactcgaattccaacaagcctagtgattatgtgaagctatcaaaagatgattcgatt 1724323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 130 - 312
Target Start/End: Complemental strand, 3157094 - 3156912
Alignment:
Q  130 ttggttcatcatcttgttttccaaataacaacaataaaggaaacgatgagaacaagagtgaagagagaaaaatagattcaaggtctttttcatgcttatt 229  Q
    |||||||||| ||||||||||| ||| | |||||| ||||||| ||||||||||  | ||||||||  ||    ||||||||||||||||||||||  ||    
T  3157094 ttggttcatcgtcttgttttcctaatgataacaatcaaggaaaagatgagaacatcaatgaagagaagaattcggattcaaggtctttttcatgctcctt 3156995  T
Q  230 ttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagcaac 312  Q
    ||| ||| || |||||||||||||||||||||| || |||||||| |||||||||||||| |||||||| ||| |||||||||    
T  3156994 ttgtaagagacaattttctacttcacaagcgttgggaggacaccagaacgctcataaggcggaacgtgctttagaaaagcaac 3156912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 121 - 387
Target Start/End: Original strand, 3167167 - 3167442
Alignment:
Q  121 ctatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaacgatgagaacaagagtgaagagagaaaaatagattcaaggtctttttc 220  Q
    |||| |||| ||||||||||| || |||||  |||||||||||| |||| || ||||||||||| | ||  ||||  ||   |||||||| |||||||||    
T  3167167 ctattcaaggtggttcatcatatttttttcgtaataacaacaatgaagggaaagatgagaacaacaatgctgagaacaattcagattcaaagtctttttc 3167266  T
Q  221 atgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagcaacttaaacag 320  Q
    ||| |  ||||||||| ||||||||||||| |||||||||||||| ||||| || || || |||||||| |||||||| ||| |||| |||| ||||||     
T  3167267 atgttgtttttgcaagagaaaattttctacatcacaagcgttaggaggacatcagaatgcccataaggctgaacgtgccttagaaaaacaacgtaaacaa 3167366  T
Q  321 aagta---------tgtattaggtttagggcagcctcttcttaacccttattttagttatccaaacactcttttta 387  Q
    |||||         ||| || ||||||||||| |||    ||||||||||||||||||||||||| ||||||||||    
T  3167367 aagtatgaaaatggtgtttttggtttagggcaaccttactttaacccttattttagttatccaaatactcttttta 3167442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 442
Target Start/End: Original strand, 2022801 - 2023049
Alignment:
Q  203 agattcaaggtctttttcatgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcatta 302  Q
    |||||||| |||||||||||| |  ||||||||| |||||||||||||||| ||||| ||||| |||||||| || || |||||||| |||||| | |||    
T  2022801 agattcaaagtctttttcatgttgtttttgcaagagaaaattttctacttcgcaagccttaggaggacaccagaatgcccataaggctgaacgtacgtta 2022900  T
Q  303 caaaagcaacttaaacagaagtatgta---------ttaggtttagggcagcctcttcttaacccttattttagttatccaaacactctttttaatcccc 393  Q
     |||| |||| |||||| | ||||| |         || ||||||||||| ||||   ||||||||||||||||||||||||  ||||||||||  | ||    
T  2022901 gaaaaacaacgtaaacaaaggtatgaaagtggtgcttttggtttagggcaacctcactttaacccttattttagttatccaagtactctttttacacgcc 2023000  T
Q  394 ctaattatggggcactcggtgttagaatggaatctatgattcaaaaacc 442  Q
    || ||| | | ||| | ||   |||||||||||| ||||||||||||||    
T  2023001 cttattttagcgcaattgggactagaatggaatccatgattcaaaaacc 2023049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 312
Target Start/End: Complemental strand, 3139408 - 3139198
Alignment:
Q  102 gagcacaaatcttttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaacgatgagaacaagagtgaagagagaaaaa 201  Q
    |||||||| | |||| || |||| | |||||||||||| |||| ||| || |||||||||||| |||| || |||| ||||||  ||||| |||  |       
T  3139408 gagcacaacttttttggccctattcgagttggttcatcttcttctttacctaataacaacaatcaagggaaagatgcgaacaacggtgaaaagaagactt 3139309  T
Q  202 tagattcaaggtctttttcatgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcatt 301  Q
     |||| ||  |||||| |  ||||  ||||||||| || |||||||||||||||| ||||| || ||||| || ||||| |||||||| ||||| |||||    
T  3139308 cagatccagtgtctttcttgtgctctttttgcaagagacaattttctacttcacaggcgttgggaggacatcagaacgcacataaggcggaacgggcatt 3139209  T
Q  302 acaaaagcaac 312  Q
    | |||||||||    
T  3139208 agaaaagcaac 3139198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 130 - 312
Target Start/End: Original strand, 23852062 - 23852244
Alignment:
Q  130 ttggttcatcatcttgttttccaaataacaacaataaaggaaacgatgagaacaagagtgaagagagaaaaatagattcaaggtctttttcatgcttatt 229  Q
    |||||||||| ||||||||||| |   |||||||| ||||||| ||||||||||  | ||||||||  ||   ||||||||| || ||||||||||  ||    
T  23852062 ttggttcatcgtcttgttttcctaccgacaacaatcaaggaaaagatgagaacatcaatgaagagaagaattcagattcaagatccttttcatgctcctt 23852161  T
Q  230 ttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagcaac 312  Q
    ||| ||| |  ||||||||||||| |||||||| || |||||||| |||||||||||||| |||||| | ||| |||||||||    
T  23852162 ttgtaagaggcaattttctacttctcaagcgttgggaggacaccagaacgctcataaggcggaacgtactttagaaaagcaac 23852244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 130 - 312
Target Start/End: Original strand, 23856629 - 23856812
Alignment:
Q  130 ttggttcatcatcttgttttccaaataacaacaataaaggaaacgatgagaacaagagtgaagagagaaaaatagattcaaggtctttttcatgcttatt 229  Q
    |||||||||| ||||||||||| |||  ||||||| ||||||| ||||||||||  | | |||||   ||  |||||||||| || ||||||||||| ||    
T  23856629 ttggttcatcgtcttgttttcctaatgccaacaatcaaggaaaagatgagaacatcaataaagaggagaatttagattcaagatccttttcatgcttttt 23856728  T
Q  230 t-tgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaacgctcataaggcagaacgtgcattacaaaagcaac 312  Q
    | || ||| || | | ||||||||||||| |||| || |||||||| |||||||||||| | |||| | | ||| |||||||||    
T  23856729 tgtgtaagagacactattctacttcacaatcgttgggaggacaccagaacgctcataagacggaacatactttagaaaagcaac 23856812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 9012161 - 9012087
Alignment:
Q  203 agattcaaggtctttttcatgcttattttgcaagggaaaattttctacttcacaagcgttaggtggacaccaaaa 277  Q
    |||||||||||| |||||||||   | |||||||| ||||||||||||| |||||||||| ||||| ||||||||    
T  9012161 agattcaaggtcattttcatgcacctattgcaaggcaaaattttctactgcacaagcgttgggtgggcaccaaaa 9012087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 442
Target Start/End: Complemental strand, 9012000 - 9011910
Alignment:
Q  352 ttaacccttattttagttatccaaacactctttttaatccccctaattatggggcactcggtgttagaatggaatctatgattcaaaaacc 442  Q
    |||||||||||||||||||||  |  ||||||||||  ||   ||||||| ||  || ||| |||||||||||||| ||||||||||||||    
T  9012000 ttaacccttattttagttatcgtagtactctttttacaccttataattataggctacccggggttagaatggaatcaatgattcaaaaacc 9011910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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