View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15155_high_3 (Length: 456)
Name: NF15155_high_3
Description: NF15155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15155_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 92 - 441
Target Start/End: Complemental strand, 37002113 - 37001764
Alignment:
| Q |
92 |
gggaaatttttgcagtttcgataaattgatggattagagcaacatcgtcttataaattcatgtagtagaatagtttattgttatcaaattatgacacctc |
191 |
Q |
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| T |
37002113 |
gggaaatttttgcagtttcgataaattgatggattagagcaacatcgtcttatacattcatgtagtagaatagtttattgttatcaaattatgacaccgc |
37002014 |
T |
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| Q |
192 |
tgagttagaaacttgataattaagaaacaaaattgacaaaatgaaatttcatgatcagaagaaatctaagaaagtaggtagtgtcatagtggtaccttag |
291 |
Q |
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| T |
37002013 |
tgagttagaaagttcataattaagaaacaaaattgacaaaatgaaatttcatgatcagaagaaatctaagaaagtaggtagtgtcatagtggtaccttag |
37001914 |
T |
|
| Q |
292 |
catgttgaggttcagaaacatcttgataaacaccaaccctaatatttcccgtaaattcaacactaggaacaaaatctccaaccaaaacatcttttttgtc |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37001913 |
catgttgaggttcagaaacatcttgataaacaccaaccctgatatttcccgtaaattcaacactaggaacaaaatctccaaccaaaacatcttttttgtc |
37001814 |
T |
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| Q |
392 |
aacaaggtccatatcaaagagatgggagaaagacttacaatcaagaactg |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37001813 |
aacaaggtccatatcaaagagatgggagaaagacttacaatcaagaactg |
37001764 |
T |
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