View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15155_high_4 (Length: 445)
Name: NF15155_high_4
Description: NF15155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15155_high_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Original strand, 8483247 - 8483675
Alignment:
| Q |
17 |
agttagagattgtacttgaatgtttcttttcaattgatcttaattgaagctcaataattgattgaatcaaattaatacgtttgattgtatagctatctca |
116 |
Q |
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| T |
8483247 |
agttagagattgtacttgaatgtttcttttcaattgatcttaattgaagctcaattattgattgaattaaattaatacgtttgattgtatagctatctca |
8483346 |
T |
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| Q |
117 |
ttatttgttgagaggttttaaaaggtgatataaaataaatttagataaggaaatatattattcaattgattaacagtaaaactattttttgtcnnnnnnn |
216 |
Q |
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| T |
8483347 |
ttatttgttgagaggttttaaaaggtgatatataataaatttagataaggaaatatattattcaattgattaacagtaaaactattttttgtcaaaaaa- |
8483445 |
T |
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| Q |
217 |
ngttaaactatttatgaaaagttgatagaaatgttatacatgttttgcttttacttccacggttttaatgctctttattcgacggtgaaggaataaa-ac |
315 |
Q |
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| T |
8483446 |
-gttaaactatttatgaaaagttgatagaaatgttatacatgttttgcttttacttccacggttttaatgctctttattcaacggtgaaggaataaattc |
8483544 |
T |
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| Q |
316 |
atcattagcaagaagatagatggtaaacattatttgagcatatagttggagaggaacagaagtgtggggggaaagc-aaaaggcatagcgtgaagaagca |
414 |
Q |
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| T |
8483545 |
atcattagcaagaagatagatggtaaacattatttgagcatatagttggagaggaacagaagtgtggggggaaagcaaaaaggcatagcgtgaagaagca |
8483644 |
T |
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| Q |
415 |
agtatgtatgacattgccaagaagcaaagcc |
445 |
Q |
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| T |
8483645 |
agtatgtatgacattgccaagaagcaaagcc |
8483675 |
T |
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