View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15155_high_6 (Length: 353)
Name: NF15155_high_6
Description: NF15155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15155_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 47837807 - 47838133
Alignment:
| Q |
18 |
ttgccaagtgcgattttggttttatttttaattggtgttggaccagtgatgatgttactttcagcagttgaagggccaatttcccgtagcggcaagaaga |
117 |
Q |
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| T |
47837807 |
ttgccaagtgcgattttggttttatttttaattggtgttggaccagtgatgatgttactttcagcagttgaagggccaatttcccgtagcggcaagaaga |
47837906 |
T |
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| Q |
118 |
aaagtgcatgctgcaaagttgtgtatttcaccatttggaatgtgttttttgtcaatgtttttaccgggtctattatcagtcaactatcagtgtttactag |
217 |
Q |
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| T |
47837907 |
aaagtgcatgctgcaaagttgtgtatttcaccatttggaatgtgttttttgtcaatgtttttaccgggtctattatcagtcaactatcagtgtttactag |
47838006 |
T |
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| Q |
218 |
tataacagaactacctgcccaattggcaaaggcagtcccagctcaggtgaagtattcatgttccaagatgataaatgacaaattcctattgtaaattata |
317 |
Q |
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| T |
47838007 |
tataacagaactacctgcccaattggcaaaggcagtcccagctcaggtgaagtattcatgttccaagatgataaatgacaaattcctattgtaaattata |
47838106 |
T |
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| Q |
318 |
caccctttgttgtataaatgatgatgt |
344 |
Q |
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| T |
47838107 |
caccctttgttgtataaattatgatgt |
47838133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 266
Target Start/End: Complemental strand, 4705816 - 4705571
Alignment:
| Q |
21 |
ccaagtgcgattttggttttatttttaattggtgttggaccagtgatgatgttactttcagcagttgaagggccaatttcccgtagcggcaagaagaaaa |
120 |
Q |
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| T |
4705816 |
ccaagtgtgatattggttttatttttgtgttttgttccaccattgatgatgctattttcaacagttgagggtcctatttcccgcagtggaaggaagaaaa |
4705717 |
T |
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| Q |
121 |
gtgcatgctgcaaagttgtgtatttcaccatttggaatgtgttttttgtcaatgtttttaccgggtctattatcagtcaactatcagtgtttactagtat |
220 |
Q |
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||||||| || |||||| |||| ||||| || ||||||||||||||| | |||||||| || || ||| |||| |||||||| ||||| ||| |||| | |
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| T |
4705716 |
gtgcatgttggaaagttttgtacttcacaatctggaatgtgttttttattaatgttttaactggttctcttataagtcaactttcagtcttttctagctt |
4705617 |
T |
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| Q |
221 |
aacagaactacctgcccaattggcaaaggcagtcccagctcaggtg |
266 |
Q |
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|| ||| || ||||| | | ||||||||||| |||||||||||| |
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| T |
4705616 |
aaaagagctgcctgcaacacttgcaaaggcagtgccagctcaggtg |
4705571 |
T |
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