View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15155_low_5 (Length: 424)
Name: NF15155_low_5
Description: NF15155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15155_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 136; Significance: 8e-71; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 262 - 409
Target Start/End: Complemental strand, 38044028 - 38043881
Alignment:
| Q |
262 |
tcattcgatatgcaagaaattaatgctactttataacaaaaacagtaacaagatctttatgtgatttagcatcacctaaatatatagtattattgatgaa |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38044028 |
tcattcgatatgcaagaaattaatgctactttataacaaaaacagtaacaagatctttatgtgatttagcatctcctaaatatatagtattattgatgaa |
38043929 |
T |
|
| Q |
362 |
taagatctttatgttatacataacatgagaatgtgctataaaatttat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38043928 |
acagatctttatgttatacataacatgagaatgtgctataaaatttat |
38043881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 38046026 - 38045877
Alignment:
| Q |
12 |
ataggtacattattgatggaatatattatattagagtaggggtcattctttgttgtgttatgcggaaattgcatgataaatgaaaattcaaagctgacca |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38046026 |
ataggtacattattgatggaatat-------tagagtaggggtcattctttgttgtgttatgcggaaattgcatgataaatgaaaattcaaagctgacca |
38045934 |
T |
|
| Q |
112 |
agacaagccatgctacgataatcatatgaatttcatggacaagaatcacaagattat |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38045933 |
agacaagccatgctacgataatcatatgaatttcatggacaagaatcacaagattat |
38045877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 38045890 - 38045851
Alignment:
| Q |
182 |
aatcacaagattataacgttgtgatccacccatcataaat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38045890 |
aatcacaagattataacgttgtgatccacccatcataaat |
38045851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University