View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15156_high_14 (Length: 239)

Name: NF15156_high_14
Description: NF15156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15156_high_14
NF15156_high_14
[»] chr8 (11 HSPs)
chr8 (63-222)||(3500294-3500453)
chr8 (65-222)||(2794968-2795125)
chr8 (65-222)||(2876591-2876748)
chr8 (83-222)||(2891057-2891196)
chr8 (65-222)||(3144067-3144224)
chr8 (61-197)||(3158642-3158778)
chr8 (65-222)||(3495145-3495302)
chr8 (65-222)||(14388739-14388896)
chr8 (86-200)||(1790895-1791009)
chr8 (65-134)||(2882641-2882710)
chr8 (83-131)||(4415473-4415521)
[»] chr7 (1 HSPs)
chr7 (143-205)||(18847756-18847818)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 3500294 - 3500453
Alignment:
Q  63 tgataatacaaggctggataaggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatatcaatgtggaatagtcaacaacgctacct 162  Q
    |||| |||||||| || |||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || |||||||||||||||||||||||    
T  3500294 tgattatacaaggttgaataaggaggaaccactgccatttcctgcggagtgtctaatgaaccaaaagcatatcgatatggaatagtcaacaacgctacct 3500393  T
Q  163 cacccttcttcatggtcattacagctctatcaagcccttcaattattttatctgctcaat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3500394 cacccttcttcatggtcattacagctctatcaagcccttcaattattttatctgctcaat 3500453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 2795125 - 2794968
Alignment:
Q  65 ataatacaaggctggataaggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatatcaatgtggaatagtcaacaacgctacctca 164  Q
    |||||||| || || || ||||||||||||||||| ||||||||||| |||| |||||||||||||||||  | ||| |||||||||||| |||||||||    
T  2795125 ataatacacggttgaattaggaggaaccactgccaattcctgctgagactctgatgaaccaaaagcatattcaggtgtaatagtcaacaaagctacctca 2795026  T
Q  165 cccttcttcatggtcattacagctctatcaagcccttcaattattttatctgctcaat 222  Q
    |||||||||||||||| ||||||| |||||||||| ||||| | ||  ||||||||||    
T  2795025 cccttcttcatggtcagtacagctttatcaagcccatcaatcacttgctctgctcaat 2794968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 2876591 - 2876748
Alignment:
Q  65 ataatacaaggctggataaggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatatcaatgtggaatagtcaacaacgctacctca 164  Q
    |||||||| || || || ||||||||||||||||| ||||||||||| |||| |||||||||||||||||  | | | |||||||||||| |||||||||    
T  2876591 ataatacacggttgaattaggaggaaccactgccaattcctgctgagactctgatgaaccaaaagcatattcaggcgcaatagtcaacaaagctacctca 2876690  T
Q  165 cccttcttcatggtcattacagctctatcaagcccttcaattattttatctgctcaat 222  Q
     ||||||||||||||| |||||||||||||||||| ||||| | ||  ||||||||||    
T  2876691 tccttcttcatggtcagtacagctctatcaagcccatcaatcacttgctctgctcaat 2876748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 222
Target Start/End: Original strand, 2891057 - 2891196
Alignment:
Q  83 aggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatatcaatgtggaatagtcaacaacgctacctcacccttcttcatggtcatt 182  Q
    ||||||||||||||||| ||||||||||| |||| |||||||||||||||||  | | | |||||||||||| ||||||||||||||||||||||||| |    
T  2891057 aggaggaaccactgccaattcctgctgagactctgatgaaccaaaagcatattcaggcgtaatagtcaacaaagctacctcacccttcttcatggtcagt 2891156  T
Q  183 acagctctatcaagcccttcaattattttatctgctcaat 222  Q
    |||||| |||||||||| ||||| | ||  ||||||||||    
T  2891157 acagctttatcaagcccatcaatcacttgctctgctcaat 2891196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 3144224 - 3144067
Alignment:
Q  65 ataatacaaggctggataaggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatatcaatgtggaatagtcaacaacgctacctca 164  Q
    |||||||| || || || ||||||||||||||||| ||||||||||| |||| |||||||||||||||||  | | | |||||||||||| |||||||||    
T  3144224 ataatacacggttgaattaggaggaaccactgccaattcctgctgagactctgatgaaccaaaagcatattcaggcgtaatagtcaacaaagctacctca 3144125  T
Q  165 cccttcttcatggtcattacagctctatcaagcccttcaattattttatctgctcaat 222  Q
    || ||||||||||||| ||||||| |||||||||| ||||| | ||  ||||||||||    
T  3144124 cctttcttcatggtcagtacagctttatcaagcccatcaatcacttgctctgctcaat 3144067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 197
Target Start/End: Complemental strand, 3158778 - 3158642
Alignment:
Q  61 cctgataatacaaggctggataaggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatatcaatgtggaatagtcaacaacgctac 160  Q
    ||||||||||||||| || || ||||||||||||||||| ||||||| ||| |||| |||||||||||||||||    | | |||||||||||| |||||    
T  3158778 cctgataatacaaggttgaattaggaggaaccactgccaattcctgccgagactctgatgaaccaaaagcatattgtggcgcaatagtcaacaaagctac 3158679  T
Q  161 ctcacccttcttcatggtcattacagctctatcaagc 197  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  3158678 ctcacccttcttcatggtcattacagctatattaagc 3158642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 3495145 - 3495302
Alignment:
Q  65 ataatacaaggctggataaggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatatcaatgtggaatagtcaacaacgctacctca 164  Q
    ||||||||||| || || |||||| |||||||||| ||||||| ||| |||  ||||||||||||||||     ||| |||||||||||| |||||||||    
T  3495145 ataatacaaggttgaattaggagggaccactgccaattcctgccgagactcggatgaaccaaaagcatactcgggtgcaatagtcaacaatgctacctca 3495244  T
Q  165 cccttcttcatggtcattacagctctatcaagcccttcaattattttatctgctcaat 222  Q
    ||||||||||||||||||||||||||||| ||||| ||||| | ||  ||||||||||    
T  3495245 cccttcttcatggtcattacagctctatcgagcccatcaatcacttgctctgctcaat 3495302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 14388739 - 14388896
Alignment:
Q  65 ataatacaaggctggataaggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatatcaatgtggaatagtcaacaacgctacctca 164  Q
    ||||||||||| || || |||||| |||||||||| ||||||||||| |||  ||||||||||||||||     ||| |||||||||||| |||||||||    
T  14388739 ataatacaaggttgaattaggagggaccactgccaattcctgctgagactcagatgaaccaaaagcatactcgggtgcaatagtcaacaatgctacctca 14388838  T
Q  165 cccttcttcatggtcattacagctctatcaagcccttcaattattttatctgctcaat 222  Q
    |||||||||||||||||||||||| |||| ||||| ||||| | ||  ||||||||||    
T  14388839 cccttcttcatggtcattacagctttatcgagcccatcaatcacttgctctgctcaat 14388896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 1791009 - 1790895
Alignment:
Q  86 aggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatatcaatgtggaatagtcaacaacgctacctcacccttcttcatggtcattaca 185  Q
    |||||||||||||| ||||||  ||| |||  ||||||||||| ||||   | ||| |||||||||| | ||||||||||||||||||||  ||||||||    
T  1791009 aggaaccactgccaattcctgtcgagactcggatgaaccaaaaccatacttaggtgcaatagtcaacgatgctacctcacccttcttcatactcattaca 1790910  T
Q  186 gctctatcaagccct 200  Q
    |||||||||||||||    
T  1790909 gctctatcaagccct 1790895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 2882641 - 2882710
Alignment:
Q  65 ataatacaaggctggataaggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagcatat 134  Q
    |||| |||||| || || ||||||||||||||||| ||||||| ||| |||| |||||||||||||||||    
T  2882641 ataacacaaggttgaattaggaggaaccactgccaattcctgccgagactctgatgaaccaaaagcatat 2882710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 4415521 - 4415473
Alignment:
Q  83 aggaggaaccactgccatttcctgctgagtctctaatgaaccaaaagca 131  Q
    ||||||||||| ||||| ||||||||||| |||| ||||||||||||||    
T  4415521 aggaggaaccattgccagttcctgctgagactctcatgaaccaaaagca 4415473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 18847756 - 18847818
Alignment:
Q  143 aatagtcaacaacgctacctcacccttcttcatggtcattacagctctatcaagcccttcaat 205  Q
    |||| |||| || |||||||||||||||||||| |||| ||||||| |||||||||| |||||    
T  18847756 aataatcaataatgctacctcacccttcttcatagtcaatacagctttatcaagcccatcaat 18847818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University