View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15156_low_1 (Length: 567)

Name: NF15156_low_1
Description: NF15156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15156_low_1
NF15156_low_1
[»] chr4 (8 HSPs)
chr4 (11-404)||(35020063-35020456)
chr4 (331-512)||(35030437-35030618)
chr4 (11-103)||(35030158-35030250)
chr4 (11-374)||(35036262-35036631)
chr4 (124-264)||(35044506-35044646)
chr4 (293-341)||(35030251-35030299)
chr4 (509-561)||(35030668-35030720)
chr4 (444-512)||(27756118-27756186)
[»] chr2 (2 HSPs)
chr2 (443-499)||(14510972-14511028)
chr2 (443-512)||(15824953-15825022)
[»] chr3 (1 HSPs)
chr3 (440-499)||(31750946-31751005)
[»] chr1 (1 HSPs)
chr1 (454-493)||(11642710-11642749)
[»] scaffold0015 (1 HSPs)
scaffold0015 (455-493)||(43244-43282)
[»] chr7 (1 HSPs)
chr7 (439-481)||(33431141-33431183)
[»] chr5 (1 HSPs)
chr5 (440-493)||(15259745-15259798)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 404
Target Start/End: Original strand, 35020063 - 35020456
Alignment:
Q  11 atggtttggagacatagcgattaacgttgtttttaggacagtaatcggaaaacgttttgatggtgatgaggaagagaatcaaaggataagaaaaatgatt 110  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35020063 atggtttgcagacatagcgattaacgttgtttttaggacagtaatgggaaaacgttttgatggtgatgaggaagagaatcaaaggataagaaaaatgatt 35020162  T
Q  111 agagannnnnnngatcttagtggttcatttgttgtttctgacacgttaccgtatttgagatggttggatttggatggaaaacagaagcaaatgaagaaaa 210  Q
    |||||        |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35020163 agagatttttttaatcttagtggttcatttgttgtttctgacatgttaccgtatttgagatggttggatttggatggaaaacagaagcaaatgaagaaaa 35020262  T
Q  211 cagcaaaagaaatggatgagtttgtttgtgtttggcttgatcaacacaaacgtaacaagaattctggtcgtgaacaagatttcatggatgtgctgctttc 310  Q
    ||||||||||  | ||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35020263 cagcaaaagagttagatgactttgtttgtgtttggcttgatcagcacaaacataagaagaattctggtcgtgaacaagatttcatggatgtgctgctttc 35020362  T
Q  311 caccattgatgaagatttagatggtcgtgatgctgatactataatcaaagctacttgtatggtacgtcacttgccacctttgtcggctctttca 404  Q
     ||| ||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| |||||||||  || ||||| |||||||||    
T  35020363 aaccgttgatgaagatttagatggccgtgatgctgatactacaatcaaagccacttgtatggtatgtcacttgcttccattgtctgctctttca 35020456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 331 - 512
Target Start/End: Original strand, 35030437 - 35030618
Alignment:
Q  331 atggtcgtgatgctgatactataatcaaagctacttgtatggtacgtcacttgccacctttgtcggctctttcagttattaaaacacttccatgtttttt 430  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35030437 atggtcgtgatgctgatactataatcaaagttacttgtatggtacgtcacttgccacctttgtcggctctttcagttattaaaacacttctatgtttttt 35030536  T
Q  431 aattggttgtcattttgatgaatttgtatatgaattttaaagatttaaatcaatgattttattgtgatacgatcttttaatg 512  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  35030537 aattggttgtcattttgatgaatttgcatatgaattttaaagatttaaatcaatgattttattttgatacgaacttttaatg 35030618  T

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Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 35030158 - 35030250
Alignment:
Q  11 atggtttggagacatagcgattaacgttgtttttaggacagtaatcggaaaacgttttgatggtgatgaggaagagaatcaaaggataagaaa 103  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35030158 atggtttgcagacatagcgattaacgttgtttttaggacagtaatgggaaaacgttttgatggtgatgaggaagagaatcaaaggataagaaa 35030250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 35036262 - 35036631
Alignment:
Q  11 atggtttggagacatagcgattaacgttgtttttaggacagtaatcggaaaacgttttgatggtgatgaggaagagaatcaaaggataagaaaaatgatt 110  Q
    ||||||||| || |||||||| |||||| | | ||| || ||||  || |||  |||||||||||| || ||||||||||| ||||| ||||||    ||    
T  35036262 atggtttggtgatatagcgatgaacgttatgtgtagaacggtaacggggaaagtttttgatggtgacgaagaagagaatcagaggattagaaaatccttt 35036361  T
Q  111 agagannnnnnngatcttagtggttcatttgttgtttctgacacgttaccgtatttgagatggttggatttggatggaaaacagaagcaaatgaagaaaa 210  Q
    || ||       ||||| || |||||||||||| | ||||||| ||| | || ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  35036362 agggactttttcgatctcagcggttcatttgttatatctgacatgttgcggttttttagatggttggatttggatggaaaacagaagcagatgaagaaaa 35036461  T
Q  211 cagcaaaagaaatggatgagtttgtttgtgtttggcttgatcaacacaaacgtaacaagaattctggtcgtgaacaa----gatttcatggatgtgctgc 306  Q
    | || |||||  | ||||| ||||||   |||||||| |||||||||||||| ||||||||  || | ||  | |||    || |||||||||||||| |    
T  35036462 cggctaaagagttagatgattttgttcaagtttggctcgatcaacacaaacgcaacaagaaacct-gccggcaccaaacttgacttcatggatgtgctcc 35036560  T
Q  307 tttccaccattgatg---aagatttagatggtcgtgatgctgatactataatcaaagctacttgtatggta 374  Q
    |||| ||| ||||||   ||||| ||||||||||||||||||| || | ||||||||| |||||| |||||    
T  35036561 tttcaaccgttgatgatcaagatatagatggtcgtgatgctgacaccacaatcaaagcaacttgtctggta 35036631  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 124 - 264
Target Start/End: Original strand, 35044506 - 35044646
Alignment:
Q  124 atcttagtggttcatttgttgtttctgacacgttaccgtatttgagatggttggatttggatggaaaacagaagcaaatgaagaaaacagcaaaagaaat 223  Q
    ||||| ||||||| |||||| | |||||  |||| |||| ||| |||||||||||||||||||||||| ||||| ||||||||||||| || |||||  |    
T  35044506 atctttgtggttcctttgttatatctgattcgttgccgtttttaagatggttggatttggatggaaaagagaaggaaatgaagaaaactgctaaagagtt 35044605  T
Q  224 ggatgagtttgtttgtgtttggcttgatcaacacaaacgta 264  Q
    |||||||||||||   | |||| ||||||||||||||||||    
T  35044606 ggatgagtttgttcaaggttggattgatcaacacaaacgta 35044646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 35030251 - 35030299
Alignment:
Q  293 catggatgtgctgctttccaccattgatgaagatttagatggtcgtgat 341  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35030251 catggatgtgctgctttccaccattgatgaagatttagatgttcgtgat 35030299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 509 - 561
Target Start/End: Original strand, 35030668 - 35030720
Alignment:
Q  509 aatgacgagattgttatttaagattaatggtcaaaggacaataagtataattt 561  Q
    |||||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  35030668 aatgacgaaattgttatttaaaattaatggtcaaaagacaataagtataattt 35030720  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 512
Target Start/End: Original strand, 27756118 - 27756186
Alignment:
Q  444 tttgatgaatttgtatatgaattttaaagatttaaatcaatgattttattgtgatacgatcttttaatg 512  Q
    |||||| |||| |||||| |||||| || ||| ||||| ||||||||||| ||||| || |||||||||    
T  27756118 tttgattaattcgtatataaattttgaaaattcaaatctatgattttattttgatatgaacttttaatg 27756186  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 499
Target Start/End: Complemental strand, 14511028 - 14510972
Alignment:
Q  443 ttttgatgaatttgtatatgaattttaaagatttaaatcaatgattttattgtgata 499  Q
    ||||||| |||||||||||||||||| |||||| ||||| || |||||||| |||||    
T  14511028 ttttgataaatttgtatatgaattttcaagattcaaatctataattttattttgata 14510972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 512
Target Start/End: Original strand, 15824953 - 15825022
Alignment:
Q  443 ttttgatgaatttgtatatgaattttaaagatttaaatcaatgattttattgtgatacgatcttttaatg 512  Q
    ||||||| | |||||||||| ||||| || ||||||||  ||||||||||| ||||| || |||||||||    
T  15824953 ttttgataagtttgtatatggatttttaaaatttaaatttatgattttattttgatatgagcttttaatg 15825022  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 499
Target Start/End: Complemental strand, 31751005 - 31750946
Alignment:
Q  440 tcattttgatgaatttgtatatgaattttaaagatttaaatcaatgattttattgtgata 499  Q
    |||||||||| |||||| ||||||||||| |||||| ||||| ||| ||||||| |||||    
T  31751005 tcattttgattaatttgcatatgaattttcaagattcaaatctatggttttattttgata 31750946  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 493
Target Start/End: Original strand, 11642710 - 11642749
Alignment:
Q  454 ttgtatatgaattttaaagatttaaatcaatgattttatt 493  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  11642710 ttgtatatgaattttcaagatttaaatctatgattttatt 11642749  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 493
Target Start/End: Complemental strand, 43282 - 43244
Alignment:
Q  455 tgtatatgaattttaaagatttaaatcaatgattttatt 493  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  43282 tgtatatgaattttcaagattcaaatcaatgattttatt 43244  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 481
Target Start/End: Complemental strand, 33431183 - 33431141
Alignment:
Q  439 gtcattttgatgaatttgtatatgaattttaaagatttaaatc 481  Q
    ||||||||||| |||||||||||||||||| |||||| |||||    
T  33431183 gtcattttgatcaatttgtatatgaattttcaagattcaaatc 33431141  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 493
Target Start/End: Original strand, 15259745 - 15259798
Alignment:
Q  440 tcattttgatgaatttgtatatgaattttaaagatttaaatcaatgattttatt 493  Q
    |||||||||  |||||| ||||||||||| |||||||||||| |||| ||||||    
T  15259745 tcattttgaacaatttgcatatgaatttttaagatttaaatctatgaatttatt 15259798  T

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