View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15156_low_2 (Length: 457)
Name: NF15156_low_2
Description: NF15156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15156_low_2 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 10 - 442
Target Start/End: Complemental strand, 48020262 - 48019830
Alignment:
| Q |
10 |
ccaccacgccaaattactccatcactatccccatactcatcgacttcaccaaccccaatttgcacggatcatcaacgcaatctcaagcaataatcggaac |
109 |
Q |
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| T |
48020262 |
ccaccaccccaaattcctccttcaccctccccataatcctcgactccaccaaccccaatttccccggttcatcaacacaatctcgaccaatcttcggatc |
48020163 |
T |
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| Q |
110 |
caaatcagacgcatcttcttcaacacgactcacaccatcaaccagaaccgcctttgctttcaacgaaacaacacaccgttcatcgtcaccgtagaatcgt |
209 |
Q |
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| T |
48020162 |
caaatcctcctcatcttcttcaacacgactcacaccatcaaccagaaccgcctttgctttcaacgaaacaacacaccgttcatcgtcaccgtagaatcgt |
48020063 |
T |
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| Q |
210 |
agccgaagaatagcgcgacgagaagagagttccgatccagcgccgtcgaagaagagattatgttgacgatgagtgataacgtggaagggagaaagcaaag |
309 |
Q |
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| T |
48020062 |
agccgaagaatagcgcgacgagaagagagttccgatccagcgccgtcgaagaagagattatgttgacgatgagtgataacgtggaagggagaaagcaaag |
48019963 |
T |
|
| Q |
310 |
tagtgacatggcgataagaatctgcgtttgggagacgaagcttgacttcaacctccatatcggaaggggaaagagagaaggagcgtgttgagaagagttt |
409 |
Q |
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| T |
48019962 |
tagtgacacggtgataagaatctgcgtttgggagacgaagcttgacttcaacctccatatcggaaggggaaagagaaaaggagcgtgttgagaagagttt |
48019863 |
T |
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| Q |
410 |
aggaggagagaccaatgcgattcgctttggaag |
442 |
Q |
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| T |
48019862 |
aggaggagagaccaatgcgattcgctttggaag |
48019830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 78 - 372
Target Start/End: Complemental strand, 48024980 - 48024686
Alignment:
| Q |
78 |
tcatcaacgcaatctcaagcaataatcggaaccaaatcagacgcatcttcttcaacacgactcacaccatcaaccagaaccgcctttgctttcaacgaaa |
177 |
Q |
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| T |
48024980 |
tcatcaacgcaatctcgaccaatcttcggatccaaatcttcctcgtcttcctctacacgacgcacgccgttgactagaaccccttttgctttaagtgaaa |
48024881 |
T |
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| Q |
178 |
caacacaccgttcatcgtcaccgtagaatcgtagccgaagaatagcgcgacgagaagagagttccgatccagcgccgtcgaagaagagattatgttgacg |
277 |
Q |
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| T |
48024880 |
cgacacaccgttcatcatcattatagaatcggaaacgaagtgtggctcgacgagaagagagttcagaggcggcgccgtcgaagaagtggttgtgttgatg |
48024781 |
T |
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| Q |
278 |
atgagtgataacgtggaagggagaaagcaaagtagtgacatggcgataagaatctgcgtttgggagacgaagcttgacttcaacctccatatcgg |
372 |
Q |
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| T |
48024780 |
atgggtgatgacgtggaagggagagagcaaagcggtgacttggcgatgagcttcggcgtttgcgagacgtagctttacttccacttccatttcgg |
48024686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 309
Target Start/End: Complemental strand, 13822 - 13523
Alignment:
| Q |
10 |
ccaccacgccaaattactccatcactatccccatactcatcgacttcaccaaccccaatttgcacggatcatcaacgcaatctcaagcaataatcggaac |
109 |
Q |
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||||||| ||||||| |||| ||||| |||||||| || |||| | ||| || ||||| || | | | ||||||||| |||||| | |||| ||||| | |
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| T |
13822 |
ccaccaccccaaattcctccttcactctccccataatcctcgaatccacaaaacccaacttccccagttcatcaacggaatctcgaccaatcttcggatc |
13723 |
T |
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| Q |
110 |
caaatcagacgcatcttcttcaacacgactcacaccatcaaccagaaccgcctttgctttcaacgaaacaacacaccgttcatcgtcaccgtagaatcgt |
209 |
Q |
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| T |
13722 |
caaatcttcctcgtcttcctctacacgacgcacgccgttgactagaaccccttttgctttaagtgaaacgacacaccgttcatcatcattgtagaatcga |
13623 |
T |
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| Q |
210 |
agccgaagaatagcgcgacgagaagagagttccgatccagcgccgtcgaagaagagattatgttgacgatgagtgataacgtggaagggagaaagcaaag |
309 |
Q |
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| T |
13622 |
aaacgaaatgtggctcgacgagaagagagttcggaggcggcgccgtcgaagaagtggttgtgttgatgatgggtgatgacgtggaagggagagagcaaag |
13523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 225 - 367
Target Start/End: Complemental strand, 51934437 - 51934295
Alignment:
| Q |
225 |
cgacgagaagagagttccgatccagcgccgtcgaagaagagattatgttgacgatgagtgataacgtggaagggagaaagcaaagtagtgacatggcgat |
324 |
Q |
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| T |
51934437 |
cgacgagaagagagttcagaggcggcgccgtcgaagaagtggttgtgttgatgatgggtgatgacgtggaagggagagagcaaagcggtgacttggcgat |
51934338 |
T |
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| Q |
325 |
aagaatctgcgtttgggagacgaagcttgacttcaacctccat |
367 |
Q |
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| T |
51934337 |
gagcttcggcgtttgcgagacgtagctttacttccacttccat |
51934295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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