View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15156_low_4 (Length: 427)
Name: NF15156_low_4
Description: NF15156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15156_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 9 - 409
Target Start/End: Complemental strand, 38145694 - 38145294
Alignment:
| Q |
9 |
gacatcatcaactccaagaccatattttctcatcaatgttccatatgcacctcctgttatgtgtccaccaacacctaagcttgtgcacaggcctgcaggg |
108 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38145694 |
gacattatcaacaccaagaccatattttctcatcaatgttccatatgcacctcctgttatgtgtccaccaacacctaagcttgtgcacaggcctgcaggg |
38145595 |
T |
|
| Q |
109 |
taaccaagaacagaacttttctcgtatattctgtaatagacttcaccgatcgtggcaccggattgaacccaagcagtgttggttttagtgtcgatgctta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38145594 |
taaccaagaacagaacttttctcgtatattctgtaatagacttcaccgatagtggcaccggattgaacccaagcagtgttggttttagtgtcgatgctta |
38145495 |
T |
|
| Q |
209 |
tgccgcgaagtttgattaaatcgacaactatgaaaggtgtttcgattttggaaacatatgaaagtccttcatagtcatggccaccacttcttactcttag |
308 |
Q |
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| T |
38145494 |
tgccgcgaagtttgattaaatcgacaactatgaaaggtgtttcgattttggaaacatatgaaagtccttcatagtcatggccaccacttcttactcttag |
38145395 |
T |
|
| Q |
309 |
atggattccaagtttcttggagcaaattacggctgcttggacatgggaatcttgggagggtgtgaatatgaattcgggtttcggtgtagatggtgccaaa |
408 |
Q |
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| T |
38145394 |
atggattccaagtttcttggagcaaattacggctgcttggacatgggaatcttgggagggtgtgaatatgaattcgggtttcggtgtagatggtgccaaa |
38145295 |
T |
|
| Q |
409 |
c |
409 |
Q |
| |
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| |
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| T |
38145294 |
c |
38145294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 11787127 - 11787506
Alignment:
| Q |
10 |
acatcatcaactccaagaccatattttctcatcaatgttccatatgcacctcctgttatgtgtccaccaacacctaagcttgtgcacaggcctgcagggt |
109 |
Q |
| |
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|||| |||| ||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||| |
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| T |
11787127 |
acattatcagctccaagaccatactttctcatcatggatccatatgcacctcctgttatgtgtccaccaacacctaaacttgtgcaaagaccagcaggga |
11787226 |
T |
|
| Q |
110 |
aaccaagaacagaacttttctcgtatattctgtaatagacttcaccgatcgtggcaccggattgaacccaagcagtgttggttttagtgtcgatgcttat |
209 |
Q |
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||||| ||||| ||||||||| | |||||| ||||| ||||| ||||| || ||||||| ||||| |||||| | || | | | || | ||| |
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| T |
11787227 |
aaccatgaacatcacttttctcatgtattctataataaacttcgccgatagtagcaccggcttgaatccaagcgctattatctccaatatcaacatttac |
11787326 |
T |
|
| Q |
210 |
gccgcgaagtttgattaaatcgacaactatgaaaggtgtttcgattttggaaacatatgaaagtccttcatagtcatggccaccacttcttactcttaga |
309 |
Q |
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||||||||||| || ||||| | ||||||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
11787327 |
atcgcgaagtttggctaggtcgacgattatgaaaggcgtttcgatttcggaaacatatgagagtccttcataatcatggccaccacttcttactcttaga |
11787426 |
T |
|
| Q |
310 |
tggattccaagtttcttggagcaaattacggctgcttggacatgggaatcttgggagggtgtgaatatgaattcgggttt |
389 |
Q |
| |
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|| || ||||||||||| || ||| | || ||| |||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
11787427 |
tgaataccaagtttctttgaacaagtaacagctacttggacatgtgaatcggttaagggtgtgaatatgaattcgggttt |
11787506 |
T |
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