View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15156_low_7 (Length: 397)
Name: NF15156_low_7
Description: NF15156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15156_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 23467497 - 23467327
Alignment:
| Q |
11 |
cgcttgttgattacaagctaagaatacagaaacagagtatcaggttagagtttgaatttgttgtagctgctggagtctagtgagttgcttgaaagacttg |
110 |
Q |
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| T |
23467497 |
cgctagttgattacaagctaagaatacagaaacagagtatcaaattagagtttgaatttgttgtagctgctggagtcttgtgaattgcttgaaatacttg |
23467398 |
T |
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| Q |
111 |
taagttaccctttgtgtgcataacccactcgaatacgtctaccatccactatctgagaaatgattaagaac |
181 |
Q |
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| T |
23467397 |
gtggttaccctttgtgtgcataacccactcgaatacgtctaccatccactatctgagaaatgattaagaac |
23467327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 241 - 382
Target Start/End: Complemental strand, 23467267 - 23467126
Alignment:
| Q |
241 |
tactccatgcaattttaagaatacatcaattatgcaatgaatctaaaacgtgttttttatagtaatgacctagctaacacttgaagtgtgaaattaatga |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
23467267 |
tactccatgcaattttaagaatacatcaattatgcaatgaatctaaaacgtgttttttatagtgatgacctagctaacacttgaagtgtgagattaatga |
23467168 |
T |
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| Q |
341 |
taatagttcagcctttataacttcaagagttgaagttaaaac |
382 |
Q |
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| T |
23467167 |
taatagttcagcctttataacttcaagagatgaagttcaaac |
23467126 |
T |
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