View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15156_low_8 (Length: 308)
Name: NF15156_low_8
Description: NF15156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15156_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 38227422 - 38227713
Alignment:
| Q |
13 |
cataacccatgcgagatagttgcaatagaatttctgcaactgtttcaataacatcatcatcgccgtcgtcaatattcatatatcttcttctcctgca--- |
109 |
Q |
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| T |
38227422 |
cataacccatgcgagatagttgcaatagaatttctgcaactgtttcaataacatcatcatcgtcgtcgtcaatattcatatatcttcttctcctgcatgg |
38227521 |
T |
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| Q |
110 |
ctgttgtttctcgaaagacggtgctgcaactgttggaccgttttgacgatagtgacatctcatatgtccattcaatgctttgttagaagtaaaaaccttg |
209 |
Q |
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| T |
38227522 |
ctgttgtttctcgaaagagggtgctgcaactgttggaccgttttgacgacagtgacatctcatatgtccattcaatgctttgttagaagtaaaaaccttg |
38227621 |
T |
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| Q |
210 |
ttgcaaacatcacatgagtgtttcttctgttttaccacatcattatgattatgagcaacagaataagaaaaacgccatatgatcttcatctc |
301 |
Q |
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| T |
38227622 |
ttgcaaacatcacatgagtgtttcttctgttttaccacatcattatgattatgagcaacagaataagaaaaacgccatatgatcttcttctc |
38227713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 231
Target Start/End: Original strand, 27782690 - 27782761
Alignment:
| Q |
160 |
agtgacatctcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgtt |
231 |
Q |
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| T |
27782690 |
agtgacatatcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgtt |
27782761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 27777271 - 27777200
Alignment:
| Q |
160 |
agtgacatctcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgtt |
231 |
Q |
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| T |
27777271 |
agtgacatatcatatgtccattcaatgctttgttagaagttaaaaccttgttgcaaacatcacatgagtgtt |
27777200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 27780685 - 27780613
Alignment:
| Q |
160 |
agtgacatctcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgttt |
232 |
Q |
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| T |
27780685 |
agtgacatatcatatgtccattcaaagctttgttagaagtaaaaaccttgttgcaaacatcacacgagtgttt |
27780613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 21900007 - 21900067
Alignment:
| Q |
165 |
catctcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatg |
225 |
Q |
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| T |
21900007 |
catctcatatgcccgttcaaagcattgttggacgaaaaaaccttgttacaaacatcacatg |
21900067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 160 - 281
Target Start/End: Original strand, 35250597 - 35250721
Alignment:
| Q |
160 |
agtgacatctcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgtttcttctgttttaccacatcattatgatt |
259 |
Q |
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| T |
35250597 |
agtgacacctcttatgttcatccaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtgtttattttgttttccaacataattgttatt |
35250696 |
T |
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| Q |
260 |
atg---agcaacagaataagaaaaa |
281 |
Q |
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| T |
35250697 |
atgagtaggaacagaataagaaaaa |
35250721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 161 - 296
Target Start/End: Original strand, 441432 - 441573
Alignment:
| Q |
161 |
gtgacatctcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgag------tgtttcttctgttttaccacatcatta |
254 |
Q |
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||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | ||||| ||| |
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| T |
441432 |
gtgacatatcttatgtctatgcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatgagtatgtatgtttgttctgtttttcaacatcctta |
441531 |
T |
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| Q |
255 |
tgattatgagcaacagaataagaaaaacgccatatgatcttc |
296 |
Q |
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| T |
441532 |
tgattaccaagaacagaataagaaaaaaaccatacgatcttc |
441573 |
T |
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