View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15157_high_12 (Length: 273)
Name: NF15157_high_12
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15157_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 32745844 - 32745586
Alignment:
| Q |
1 |
catgctttgtctcaactaacacaattaacatcacttgacttgagggacaacaannnnnnnggaaatattccacagtggatcgataggctctcaatgttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32745844 |
catgctttgtctcaactaacacaattaacatcacttgacttgagggacaacaatttttttggaaatattccacagtggatcaataggctctcaatgttaa |
32745745 |
T |
|
| Q |
101 |
gagttcttttactggcaggaaataaattaacaggtccaattcctatctatgtgtgtgaactagaacatgtcaaaattatggatctctcacataattggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32745744 |
gagttcttttactggcaggaaataaattaacaggtccaattcctatctatgtgtgtgaactagaacatgtcaaaattatggatctctcacataattggat |
32745645 |
T |
|
| Q |
201 |
tagtgaaacaataccttcatgcattaataacatatcgtttcgaatggtggagtatgaaa |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32745644 |
tagtgaaacaataccttcatgcattaataacatatcgtttcgaatggtggagtatgaaa |
32745586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 2 - 253
Target Start/End: Complemental strand, 4912835 - 4912584
Alignment:
| Q |
2 |
atgctttgtctcaactaacacaattaacatcacttgacttgagggacaacaannnnnnnggaaatattccacagtggatcgataggctctcaatgttaag |
101 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| | |||||||||| |||||| |
|
|
| T |
4912835 |
atgctttttctcaactaacaaaattaacatcactagacctgagggacaacaatttttttggaaatattccacagtggatcaacaggctctcaaagttaag |
4912736 |
T |
|
| Q |
102 |
agttcttttactggcaggaaataaattaacaggtccaattcctatctatgtgtgtgaactagaacatgtcaaaattatggatctctcacataattggatt |
201 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4912735 |
agttcttttactggcagggaataaattaacaggtccaattcctatctatgtgtgtgaacttgaacatgtcagaattatggatctctcacataattggatt |
4912636 |
T |
|
| Q |
202 |
agtgaaacaataccttcatgcattaataacatatcgtttcgaatggtggagt |
253 |
Q |
| |
|
| ||||||||||||| |||||||||| || ||||| ||| |||||| |||| |
|
|
| T |
4912635 |
aatgaaacaatacctccatgcattaagaatatatcatttaaaatggtagagt |
4912584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University