View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15157_high_17 (Length: 254)
Name: NF15157_high_17
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15157_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 43637701 - 43637464
Alignment:
| Q |
1 |
cttccaacgagagactctttatttgtagaccctttacatgatggcaaaacaatgctcaaaatttggaacctcaacaaagtaagtcacaaaactacctatt |
100 |
Q |
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| T |
43637701 |
cttccaacgagagactctttatttgtagaccctttacatgatggcaaaacaatgctcaaaatttggaacctcaacaaagtaagtcacaaaactacctatt |
43637602 |
T |
|
| Q |
101 |
ccgttaattcaatccttcaaatttacgaaataacaattttgaacattctatgtttgtctagatgcagtagtgaaagactatttgagtcaatattcatatc |
200 |
Q |
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| T |
43637601 |
ccgttaattcaatccttcaaatttacgaaataacaattttgaacattctatgtttgtctagatgcagtagtgaaagactatttgagtcaatatgcatatc |
43637502 |
T |
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| Q |
201 |
tttattgattcgatggatgattactgtagtaatatttt |
238 |
Q |
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| T |
43637501 |
tttattgattcgatggatgattactatagtaatatttt |
43637464 |
T |
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Back To:
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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 34696926 - 34696860
Alignment:
| Q |
22 |
tttgtagaccctttacatgatggcaaaacaatgctcaaaatttggaacctcaacaaagtaagtcaca |
88 |
Q |
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| T |
34696926 |
tttgaagaccctttacatgatggccaaacaatgctcaaaatttggaatctcaacaaagtgagtcaca |
34696860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 489163 - 489215
Alignment:
| Q |
31 |
cctttacatgatggcaaaacaatgctcaaaatttggaacctcaacaaagtaag |
83 |
Q |
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| T |
489163 |
cctttacatgatggcaaaactatgctcaaaatttggaacctcaataaggtaag |
489215 |
T |
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