View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15157_high_18 (Length: 240)
Name: NF15157_high_18
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15157_high_18 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 139636 - 139809
Alignment:
| Q |
19 |
cataggaactatcacacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattcctatcatgtctctaacttcattcgcagccaaa |
118 |
Q |
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| T |
139636 |
cataggaactatcacacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattccaatcatgtctctaacttcattcgcagccaaa |
139735 |
T |
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| Q |
119 |
ccagaattattatctccaagattgccacatttcattcaagtaggggatgatattaaccttcacatgcaatgcat |
192 |
Q |
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| T |
139736 |
ccagaattattatctccaagattgccacatttcattaaagtaggggatgatattaaccttcacatgcaatgcat |
139809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 148246 - 148410
Alignment:
| Q |
20 |
ataggaactatcacacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattcctatcatgtctctaacttcattcgcagccaaac |
119 |
Q |
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| T |
148246 |
ataggaactactacacacagcgaagcaacactggcaagtaaattcagtgacaccataaagaacattcctatcatatctctaacttcacctatgaacaaac |
148345 |
T |
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| Q |
120 |
cagaattattatctccaagattgccacatttcattcaagtaggggatgatattaaccttcacatg |
184 |
Q |
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| T |
148346 |
cagaattattatctcctagattgccacatttcatccaagtaggggatgatattaacctccacatg |
148410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 24896960 - 24897131
Alignment:
| Q |
21 |
taggaactatcacacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattcctatcatgtctctaacttcattcgcagccaaacc |
120 |
Q |
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| T |
24896960 |
taggaacgattacacacaacgaagcaacaattgctagtgaactcaacgacaacataaagaacactcctatcttgtctctaacttcatttgctggcagaca |
24897059 |
T |
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| Q |
121 |
agaattattatctccaagattgccacatttcattcaagtaggggatgatattaaccttcacatgcaatgcat |
192 |
Q |
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| T |
24897060 |
agaattattatctcctagattgccacatttcatccaattaggagatgatattaaccatcacatccaatgcat |
24897131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 24909063 - 24909234
Alignment:
| Q |
21 |
taggaactatcacacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattcctatcatgtctctaacttcattcgcagccaaacc |
120 |
Q |
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| T |
24909063 |
taggaacgattacacacaacgaagcaacacttgctagtgaattcgacgacaacataaagaacactcctatcttgtctctaacttcatttgctggcagaca |
24909162 |
T |
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| Q |
121 |
agaattattatctccaagattgccacatttcattcaagtaggggatgatattaaccttcacatgcaatgcat |
192 |
Q |
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| T |
24909163 |
agaattattatctcctagattgccacatttcatccaactcggagatgatattaaccatcacatccaatgcat |
24909234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 24986566 - 24986737
Alignment:
| Q |
21 |
taggaactatcacacacaatgaagcaacactggcaagtgaattcagtgacacaataaagaacattcctatcatgtctctaacttcattcgcagccaaacc |
120 |
Q |
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||||||| || |||||||| ||||||||||| || ||||||||| |||| |||||||||| ||||||| |||||||||||||||| || | || || |
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| T |
24986566 |
taggaacgattacacacaaagaagcaacacttgctagtgaattcgacgacaacataaagaacaatcctatcttgtctctaacttcatttgctggcagaca |
24986665 |
T |
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| Q |
121 |
agaattattatctccaagattgccacatttcattcaagtaggggatgatattaaccttcacatgcaatgcat |
192 |
Q |
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| T |
24986666 |
agaattattatctcctagattgccacatttcatccaactcagagatgatattaaccatcacatccaatgcat |
24986737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 22739 - 22823
Alignment:
| Q |
93 |
tgtctctaacttcattcgcagccaaaccagaa-ttattatctccaagattgccacatttcattcaagtaggggatgatattaacc |
176 |
Q |
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| T |
22739 |
tgtctctaacttcatttgctggcagacaagaaattattatctcctagattgccacatttcatccaactcagagatgatattaacc |
22823 |
T |
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