View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15157_high_20 (Length: 237)

Name: NF15157_high_20
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15157_high_20
NF15157_high_20
[»] chr2 (4 HSPs)
chr2 (10-237)||(43874637-43874864)
chr2 (10-208)||(43863478-43863676)
chr2 (10-208)||(43866953-43867151)
chr2 (10-227)||(38989575-38989792)
[»] chr3 (12 HSPs)
chr3 (14-211)||(777614-777811)
chr3 (95-222)||(476508-476635)
chr3 (92-221)||(7033645-7033774)
chr3 (14-211)||(481452-481649)
chr3 (95-223)||(8032801-8032932)
chr3 (80-208)||(1186729-1186860)
chr3 (80-208)||(1204793-1204924)
chr3 (80-208)||(1304166-1304297)
chr3 (88-145)||(7029644-7029701)
chr3 (95-146)||(13490423-13490474)
chr3 (107-139)||(13485474-13485506)
chr3 (80-237)||(5360509-5360669)
[»] chr4 (1 HSPs)
chr4 (10-221)||(52187295-52187506)
[»] scaffold0438 (1 HSPs)
scaffold0438 (95-223)||(5783-5914)
[»] chr8 (3 HSPs)
chr8 (95-223)||(26291402-26291533)
chr8 (95-223)||(26304659-26304790)
chr8 (95-223)||(26338014-26338145)
[»] chr1 (1 HSPs)
chr1 (100-220)||(14288419-14288539)
[»] chr6 (1 HSPs)
chr6 (178-216)||(34800051-34800089)
[»] chr5 (1 HSPs)
chr5 (101-145)||(7022590-7022634)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 43874637 - 43874864
Alignment:
Q  10 aagcaaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattggtcgcaaggtcgcaatcatccataagtatagttaaattgac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43874637 aagcaaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattggtcgcaaggtcgcaatcatccataagtatagttaaattgac 43874736  T
Q  110 aagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggctcgaca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43874737 aagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggctcgaca 43874836  T
Q  210 cagccatcatcatttcgatgcaaggcaa 237  Q
    |||||||||||| ||| |||||||||||    
T  43874837 cagccatcatcacttcaatgcaaggcaa 43874864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 43863478 - 43863676
Alignment:
Q  10 aagcaaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattggtcgcaaggtcgcaatcatccataagtatagttaaattgac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43863478 aagcaaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattgatcgcaaggtcgcaatcatccataagtatagttaaattgac 43863577  T
Q  110 aagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggctcgac 208  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| || |||||||||||    
T  43863578 aagcctggtacttgatatgcaaaggttttgtgcatcctgaactatacaactgtcaatgatcaaacgatccaacatgttatatgtcgagaagggctcgac 43863676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 43866953 - 43867151
Alignment:
Q  10 aagcaaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattggtcgcaaggtcgcaatcatccataagtatagttaaattgac 109  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||  | | || ||||||| ||||| |||||||||||||||    
T  43866953 aagcaaaggtttgaagacttggagcatacagctcgagtccaaaataggttccgataatggtcttaggctcacaatcatgcataattatagttaaattgac 43867052  T
Q  110 aagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggctcgac 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43867053 aagcttggtacttgatatgcaaaggttttgtgcatcctgaactatacaactgtcaatgatcaaacgattcaacatgttaaatgtcgaaaagggctcgac 43867151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 38989792 - 38989575
Alignment:
Q  10 aagcaaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattggtcgcaaggtcgcaatcatccataagtatagttaaattgac 109  Q
    |||||||| | ||||||||||||||||||||||||| |||||||||| |||| ||||  ||| || |  |  || |   |||||||||| ||||||||||    
T  38989792 aagcaaagttatgaagacttggagcatatagctcgattccaaaatagattccaatatatgtctcaggaacagaagcccacataagtatacttaaattgac 38989693  T
Q  110 aagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggctcgaca 209  Q
    |||||||||||||||||||||||| |||||||| ||| |||||| ||||| |||||||||||||| ||||||||| |||||||| ||||||||||| |||    
T  38989692 aagcttggtacttgatatgcaaagattttgtgcgtccagaactatacaacagtcaatgatcaaactattcaacattttaaatgtggaaaagggctcaaca 38989593  T
Q  210 cagccatcatcatttcga 227  Q
    || |||| |||| |||||    
T  38989592 caaccattatcacttcga 38989575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 777614 - 777811
Alignment:
Q  14 aaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattggtcgcaaggtcgcaatcatccataagtatagttaaattgacaagc 113  Q
    |||||| ||||||| ||||||||||||||||||| ||||||| |||||||||| |||| |||| || ||||||  |||||| ||||| ||| | |||||     
T  777614 aaaggtatgaagacatggagcatatagctcgagttcaaaataagttccgatataggtctcaagatcacaatcacacataaggatagtaaaactaacaagt 777713  T
Q  114 ttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggctcgacaca 211  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||  ||||||||||||| ||||||||| |||||||||||||| |||||||||||    
T  777714 ttggtacttgatatgcaaaggttttgtgcatccataactatacaacaatcaatgatcaaactattcaacattttaaatgttgaaaatggctcgacaca 777811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 222
Target Start/End: Complemental strand, 476635 - 476508
Alignment:
Q  95 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgtt 194  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||| || |||   |||||||||||||  ||||||||||||||||||     
T  476635 tatagttaaattgagaagcttggtacttgaaatgcgaaggttttgtgcatccagaattacacataagtcaatgatcaaagtattcaacatgttaaatgtg 476536  T
Q  195 gaaaagggctcgacacagccatcatcat 222  Q
    |||||||| ||||| || ||||||||||    
T  476535 gaaaaggggtcgacgcaaccatcatcat 476508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 7033774 - 7033645
Alignment:
Q  92 aagtatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaat 191  Q
    ||||||||||||| | |||||||||| |||||||||||||||||||||||||||   ||| | |||||| ||||||||||||| ||| ||||| ||||||    
T  7033774 aagtatagttaaactaacaagcttgggacttgatatgcaaaggttttgtgcatcacaaaccatacaactatcaatgatcaaactatttaacattttaaat 7033675  T
Q  192 gttgaaaagggctcgacacagccatcatca 221  Q
     | ||||||||||||||||  |||||||||    
T  7033674 ttggaaaagggctcgacacgaccatcatca 7033645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 481649 - 481452
Alignment:
Q  14 aaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattggtcgcaagg-tcgcaatcatccataagtatagttaaattgacaag 112  Q
    |||||| |||| | |||||||||||| ||| | ||| |||||||||| || |||| || | ||| || | ||||| ||||  |||||||||| ||| |||    
T  481649 aaaggtatgaacagttggagcatataactcaattccgaaataggttctgaaattg-tccctaggatcaccatcatacatacatatagttaaactgagaag 481551  T
Q  113 cttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggctcgacaca 211  Q
    |||||||||||| |||||||||||| |||||||| ||| || ||| | |||||||||||||  || ||||||||||||||  |||||||| ||||||||    
T  481550 cttggtacttgaaatgcaaaggtttcgtgcatccagaagtacacagcagtcaatgatcaaagtatccaacatgttaaatgcggaaaaggggtcgacaca 481452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 95 - 223
Target Start/End: Original strand, 8032801 - 8032932
Alignment:
Q  95 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaac---taaacaactgtcaatgatcaaacgattcaacatgttaaat 191  Q
    ||||||||||||||||||||||||| |||| |||| ||||||||||||||  | |||   || |||  ||||||||||||||  | ||||||||||||||    
T  8032801 tatagttaaattgacaagcttggtatttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtcaacatgttaaat 8032900  T
Q  192 gttgaaaagggctcgacacagccatcatcatt 223  Q
    |  |||||||| |||||||| |||||||||||    
T  8032901 gcagaaaagggatcgacacaaccatcatcatt 8032932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 208
Target Start/End: Complemental strand, 1186860 - 1186729
Alignment:
Q  80 gcaatcatccataagtatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcat---cctgaactaaacaactgtcaatgatcaaacga 176  Q
    |||| ||| |||| ||||||||||||||| ||||||||||| ||| |||| ||||||||||||||   ||  || || ||| | |||||||||||||  |    
T  1186860 gcaaccatacatacgtatagttaaattgagaagcttggtacatgaaatgcgaaggttttgtgcattacccctaagtacacagcggtcaatgatcaaagta 1186761  T
Q  177 ttcaacatgttaaatgttgaaaagggctcgac 208  Q
    ||||||||||||||||| |||||||| |||||    
T  1186760 ttcaacatgttaaatgtggaaaaggggtcgac 1186729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 208
Target Start/End: Complemental strand, 1204924 - 1204793
Alignment:
Q  80 gcaatcatccataagtatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcat---cctgaactaaacaactgtcaatgatcaaacga 176  Q
    |||| ||| |||| ||||||||||||||| ||||||||||| ||| |||| ||||||||||||||   ||  || || ||| | |||||||||||||  |    
T  1204924 gcaaccatacatacgtatagttaaattgagaagcttggtacatgaaatgcgaaggttttgtgcattacccctaagtacacagcggtcaatgatcaaagta 1204825  T
Q  177 ttcaacatgttaaatgttgaaaagggctcgac 208  Q
    ||||||||||||||||| |||||||| |||||    
T  1204824 ttcaacatgttaaatgtggaaaaggggtcgac 1204793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 1304166 - 1304297
Alignment:
Q  80 gcaatcatccataagtatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcat---cctgaactaaacaactgtcaatgatcaaacga 176  Q
    |||| ||| |||| ||||||||||||||| ||||||||||| ||| |||| ||||||||||||||   ||  || || ||| | |||||||||||||  |    
T  1304166 gcaaccatacatacgtatagttaaattgagaagcttggtacatgaaatgcgaaggttttgtgcattacccctaagtacacagcggtcaatgatcaaagta 1304265  T
Q  177 ttcaacatgttaaatgttgaaaagggctcgac 208  Q
    ||||||||||||||||| |||||||| |||||    
T  1304266 ttcaacatgttaaatgtggaaaaggggtcgac 1304297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 7029701 - 7029644
Alignment:
Q  88 ccataagtatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatc 145  Q
    ||||||||| | ||||||| |||||||||| |||||||||||||||||||||||||||    
T  7029701 ccataagtaaacttaaattaacaagcttgggacttgatatgcaaaggttttgtgcatc 7029644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 13490423 - 13490474
Alignment:
Q  95 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcc 146  Q
    ||||||||| | |||||| |||||||||||||||||||||||||| ||||||    
T  13490423 tatagttaattggacaagtttggtacttgatatgcaaaggttttgcgcatcc 13490474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 13485474 - 13485506
Alignment:
Q  107 gacaagcttggtacttgatatgcaaaggttttg 139  Q
    |||||||||||||||||||||||||||||||||    
T  13485474 gacaagcttggtacttgatatgcaaaggttttg 13485506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 237
Target Start/End: Original strand, 5360509 - 5360669
Alignment:
Q  80 gcaatcatccataagtatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcat---cctgaactaaacaactgtcaatgatcaaacga 176  Q
    |||||||| |||  ||||||||||||| ||| ||||||||||||| || | | ||||||||||||   |  ||| || ||| | ||||||| |||||  |    
T  5360509 gcaatcatacatttgtatagttaaattaacaggcttggtacttgaaatacgatggttttgtgcattagcaagaagtacacagcggtcaatgctcaaagta 5360608  T
Q  177 ttcaacatgttaaatgttgaaaagggctcgacacagccatcatcatttcgatgcaaggcaa 237  Q
      |||||||||||||   |||||||| |||||| | ||||||||||| ||||  |||||||    
T  5360609 gacaacatgttaaattcggaaaaggggtcgacaaaaccatcatcattgcgataaaaggcaa 5360669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 52187506 - 52187295
Alignment:
Q  10 aagcaaaggtttgaagacttggagcatatagctcgagtccaaaataggttccgatattggtcgcaaggtcgcaatcatccataagtatagttaaattgac 109  Q
    |||||||||| ||||||||||||||||||||||| | |||||||||| |||| | || |||| || |  |  ||||   |||||||||| ||||||||||    
T  52187506 aagcaaaggtatgaagacttggagcatatagctcaattccaaaatagattccaacataggtctcaggaacagaatcccacataagtatacttaaattgac 52187407  T
Q  110 aagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaagggctcgaca 209  Q
    ||| |||| ||||||||||||||| |||||||| ||  |||||| ||||| |||||||| |||||  |||||||| ||||| || |||||||||||||||    
T  52187406 aagtttggcacttgatatgcaaagtttttgtgcgtcgagaactatacaacagtcaatgaccaaactgttcaacattttaaacgtggaaaagggctcgaca 52187307  T
Q  210 cagccatcatca 221  Q
    || |||||||||    
T  52187306 caaccatcatca 52187295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 5914 - 5783
Alignment:
Q  95 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaac---taaacaactgtcaatgatcaaacgattcaacatgttaaat 191  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||  | |||   || |||  ||||||||||||||  | |||||||||| |||    
T  5914 tatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtcaacatgttgaat 5815  T
Q  192 gttgaaaagggctcgacacagccatcatcatt 223  Q
    || ||||| || || ||||| |||||||||||    
T  5814 gtggaaaaaggatcaacacaaccatcatcatt 5783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 26291533 - 26291402
Alignment:
Q  95 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaac---taaacaactgtcaatgatcaaacgattcaacatgttaaat 191  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||  | |||   || |||  ||||||||||||||  | |||||||||| |||    
T  26291533 tatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtcaacatgttgaat 26291434  T
Q  192 gttgaaaagggctcgacacagccatcatcatt 223  Q
    || ||||| || || ||||| |||||||||||    
T  26291433 gtggaaaaaggatcaacacaaccatcatcatt 26291402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 26304790 - 26304659
Alignment:
Q  95 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaac---taaacaactgtcaatgatcaaacgattcaacatgttaaat 191  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||  | |||   || |||  ||||||||||||||  | |||||||||| |||    
T  26304790 tatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtcaacatgttgaat 26304691  T
Q  192 gttgaaaagggctcgacacagccatcatcatt 223  Q
    || ||||| || || ||||| |||||||||||    
T  26304690 gtggaaaaaggatcaacacaaccatcatcatt 26304659  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 26338145 - 26338014
Alignment:
Q  95 tatagttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaac---taaacaactgtcaatgatcaaacgattcaacatgttaaat 191  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||  | |||   || |||  ||||||||||||||  | |||||||||| |||    
T  26338145 tatagttaaattgacaagcttggtacttgaaatgcgaaggttttgtgcattgtcaacaagtacacatttgtcaatgatcaaagtagtcaacatgttgaat 26338046  T
Q  192 gttgaaaagggctcgacacagccatcatcatt 223  Q
    || ||||| || || ||||| |||||||||||    
T  26338045 gtggaaaaaggatcaacacaaccatcatcatt 26338014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 14288419 - 14288539
Alignment:
Q  100 ttaaattgacaagcttggtacttgatatgcaaaggttttgtgcatcctgaactaaacaactgtcaatgatcaaacgattcaacatgttaaatgttgaaaa 199  Q
    ||||||| |||||  ||||||| |||||||| |||||||||  ||||  ||||  |||  | ||||||||||||  ||||||| ||||| ||| ||||||    
T  14288419 ttaaattaacaagtgtggtactagatatgcagaggttttgtttatccacaacttgacatttttcaatgatcaaagtattcaacttgttacatgatgaaaa 14288518  T
Q  200 gggctcgacacagccatcatc 220  Q
     ||||| |||| |||||||||    
T  14288519 aggctcaacacggccatcatc 14288539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 34800051 - 34800089
Alignment:
Q  178 tcaacatgttaaatgttgaaaagggctcgacacagccat 216  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  34800051 tcaacatgttacatgttgaaaagggctcaacacagccat 34800089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 7022634 - 7022590
Alignment:
Q  101 taaattgacaagcttggtacttgatatgcaaaggttttgtgcatc 145  Q
    |||| |||||||  || ||||||||||||||||||||||||||||    
T  7022634 taaagtgacaagtgtgatacttgatatgcaaaggttttgtgcatc 7022590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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