View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15157_high_3 (Length: 440)
Name: NF15157_high_3
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15157_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 2 - 438
Target Start/End: Original strand, 41538002 - 41538445
Alignment:
| Q |
2 |
tgtggttctcagttcttagttgacttttgtttcttctctggtgtaatttttcttattggatcaaaccccaaatcttcaagtgagaaacctaagtttgcat |
101 |
Q |
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| T |
41538002 |
tgtggttctcagttcttagttgacttttgtttcttctctggtgtaatttttcttattggatcaaaccccaaatcttcaagtgagaaacctaagtttgcat |
41538101 |
T |
|
| Q |
102 |
agttggaggtgctgcttatgtctattttgcgttgtgaataaatcttcggcttagaatattgggtactctattgttggccggaggaactatgctccttata |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41538102 |
agttggaggtgctgcttatgtctattttgcgttgtgaataaatcttcggcttagaatactgggtactctattgttggccggaggaactatgctccttata |
41538201 |
T |
|
| Q |
202 |
taacactgaaatacagagatgtccctgtcatgttatgtttgaactccctaaactctaaatgacactctaaccccctctagtttccaaaaagcacccacct |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41538202 |
taacactgaaatacagagatgtccctgtcatgttatgtttgaactccctaaactctaaatgacgctctaaccccctctagtttccaaaaagcacccacct |
41538301 |
T |
|
| Q |
302 |
gcct---aacttgaata----aatttaagtctctgctaacttgaataaannnnnnnncacagcccgttacctttactcgtcgctttaattcttagattca |
394 |
Q |
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|||| ||| | || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41538302 |
gcctgccctcttcattagcggcatttaagtctctgctaacttggataaattttttttcacagcccgttacctttactcgtcgctttaattcttagattca |
41538401 |
T |
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| Q |
395 |
tttgcctaaccgctttgtataggacatttcgttcatctctctcg |
438 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41538402 |
tttgcctaaccgctttgtataggacatttcgttcatccctctcg |
41538445 |
T |
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