View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15157_high_6 (Length: 354)
Name: NF15157_high_6
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15157_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 2929905 - 2929776
Alignment:
| Q |
1 |
atatattatgcattgtccctaatgattaaactcaagatgacaaagataagaaaatattaagataacaatatactagcatctacggttaaagaaataaaat |
100 |
Q |
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| T |
2929905 |
atatattttgcattgtccctagtgattaaactcaagatgacaaagctaagaaaatattaagataacaatatactaacatctacggttaaagaaataaaat |
2929806 |
T |
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| Q |
101 |
aacttgctacaaaataaaatttaaaagact |
130 |
Q |
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| T |
2929805 |
aacttactacaaaataaaatttataagact |
2929776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 207 - 354
Target Start/End: Complemental strand, 2929728 - 2929588
Alignment:
| Q |
207 |
cacacttatcccgtaccgtaccgaaccttttctttgtgggccaacctagctaacaacctagtatagataacgacaacaaacattacag--aaaaaacaaa |
304 |
Q |
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| T |
2929728 |
cacacttatcccgtaccgtaccgaaccttttctttgtgggccaacctagctaacaacctagtat-----aagac----aacattgcagaaaaaaaacaaa |
2929638 |
T |
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| Q |
305 |
agtccaagattttctcattccattccttcattctcatttcacaatgatga |
354 |
Q |
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| T |
2929637 |
agtccaagattttctcattccattccttcattctcatttctcaatgatga |
2929588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 2929786 - 2929746
Alignment:
| Q |
150 |
tttaaaagactaacttgttta-tttaatcatggatcaattg |
189 |
Q |
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| T |
2929786 |
tttataagactaacttgtttattttaatcatggatcaattg |
2929746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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