View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15157_high_8 (Length: 323)
Name: NF15157_high_8
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15157_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 46876659 - 46876960
Alignment:
| Q |
16 |
gattcgacctgaactaaaatttattaaccatttgattccagttacttggttacttctgaaattagttgcaaagtttatttcaatatattttctcaaagca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46876659 |
gattcgacctgaactaaaatttattaaccatttgattccagttacttggttacttctgaaattagttgcaaagttcatttcaatatattttctcaaagca |
46876758 |
T |
|
| Q |
116 |
acttccgttcagttttcttcattccaaaaaagttcttttttcatttatgtacttaattaaaatagtgtttaacttgccttcttgttaatattatagagaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46876759 |
acttccgttcagttttcttcattccaaaaaagttcttttttcaattatgtacttaattaaaatagtgtttaacttgccttcttgttaatattatagagaa |
46876858 |
T |
|
| Q |
216 |
gtgtaaagaaagtgaggccaaacgataccttaatattactagtcggttaaagtcagaccctctcgtctcattagccaattactttgaaagaatttcatct |
315 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46876859 |
gtataaagaaagtgaggccaaacgataccttaatattactagtcggttaaagtcagaccctctcgtctcattagccaattactttgaaagaatttcatct |
46876958 |
T |
|
| Q |
316 |
ca |
317 |
Q |
| |
|
|| |
|
|
| T |
46876959 |
ca |
46876960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University