View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15157_low_1 (Length: 733)

Name: NF15157_low_1
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15157_low_1
NF15157_low_1
[»] chr5 (3 HSPs)
chr5 (1-716)||(40141091-40141808)
chr5 (209-248)||(28322259-28322298)
chr5 (209-256)||(15086716-15086763)
[»] chr1 (1 HSPs)
chr1 (209-250)||(3451873-3451914)
[»] chr7 (2 HSPs)
chr7 (209-284)||(46179876-46179951)
chr7 (209-256)||(10893863-10893910)
[»] chr4 (4 HSPs)
chr4 (209-243)||(2796564-2796598)
chr4 (202-272)||(13307888-13307957)
chr4 (211-255)||(20204669-20204714)
chr4 (219-256)||(50699198-50699235)
[»] chr6 (3 HSPs)
chr6 (214-254)||(24821696-24821736)
chr6 (211-250)||(4012740-4012779)
chr6 (209-242)||(32577472-32577505)
[»] chr3 (1 HSPs)
chr3 (209-250)||(49636826-49636867)
[»] chr2 (1 HSPs)
chr2 (209-250)||(35198231-35198272)


Alignment Details
Target: chr5 (Bit Score: 651; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 1 - 716
Target Start/End: Original strand, 40141091 - 40141808
Alignment:
Q  1 aagcatttgggcaacctgctactctccaagaaccggtagagcgtctacctttgattgacaatctgtcaaaaattcacatattgactcttttattagaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40141091 aagcatttgggcaacctgctactctccaagaaccggtagagcgtctacctttgattgacaatctgtcaaaaattcacatattgactcttttattagaatg 40141190  T
Q  101 aaacgagatctaatatctaatagtaccgtaaattgcaaagagcgacgaagcaaggcactgacacatagacaaactccggacacaacatggacatgagaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40141191 aaacgagatctaatatctaatagtaccgtaaattgcaaagagcgacgaagcaaggcactgacacatagacaaactccggacacaacatggacatgagaaa 40141290  T
Q  201 taatttttagaaaatgaattaattgaatttaatcacatgtgttggtgtcggacacccccacgtgtcagacactagacaagccttgcatcaaaagtgtcaa 300  Q
    | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40141291 tcatttttagaaaatgaattaattgaatttaaccacatgtgttggtgtcggacacccccacgtgtcagacactagacaagccttgcatcaaaagtgtcaa 40141390  T
Q  301 tgtgaaaataaaaaactgctgcttacttttgatcatcaacctccactcttatgtcattaacactgacaccaggaacttccaccatgataacatatttact 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40141391 tgtgaaaataaaaaactgctgcttacttttgatcatcaacctccactcttatgtcattaacactgacaccaggaacttccaccatgataacatatttact 40141490  T
Q  401 ttctgattctgcaacatccattcttggtgaccactcgattcctgtaaag--nnnnnnnngttacacaaataatatatttctaacaataattagctagata 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||| ||    
T  40141491 ttctgattctgcaacatccattcttggtgaccactcgattcctgtaaagaaaaaaaaaagttacacaaataatatatttctaacaataattagctagtta 40141590  T
Q  499 ttatatattataacttgtagtaattaattttcaaagtgcaaaatgctaatcaccaattccagaatggtgtattcttttctcattatttagctgttcttct 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||    
T  40141591 ttatatattataacttgtagtaattaattttcaaagtgcaaaatgctaatcaccaatttcagaatggtgtattcttttctcattatttagctgctctcct 40141690  T
Q  599 tgtctaatctgttttcttggcctagcaaatgaaggtggctcaagtgaatcaaaatcatagccttgcattttagtcattggttggacaactgaatttgaaa 698  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40141691 tgtctaatctgtttgcttggcctagcaaatgaaggtggctcaagtgaatcaaaatcatagccttgcattttagtcattggttggacaactgaatttgaaa 40141790  T
Q  699 ccattgattctttccttg 716  Q
    | ||||||||||||||||    
T  40141791 cgattgattctttccttg 40141808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 28322259 - 28322298
Alignment:
Q  209 agaaaatgaattaattgaatttaatcacatgtgttggtgt 248  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  28322259 agaaaatgaattaattgaatgtaatcacatgtgttggtgt 28322298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 15086716 - 15086763
Alignment:
Q  209 agaaaatgaattaattgaatttaatcacatgtgttggtgtcggacacc 256  Q
    ||||| ||||||| |||||  |||||||||||||||||||||||||||    
T  15086716 agaaagtgaattatttgaacgtaatcacatgtgttggtgtcggacacc 15086763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 3451873 - 3451914
Alignment:
Q  209 agaaaatgaattaattgaatttaatcacatgtgttggtgtcg 250  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  3451873 agaaaacgaattaattgaatttaatcacatgtgttggtgtcg 3451914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 46179951 - 46179876
Alignment:
Q  209 agaaaatgaattaattgaatttaatcacatgtgttggtgtcggacacccccacgtgtcagacactagacaagcctt 284  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||| ||  |||| ||||  |||||||||| |||||    
T  46179951 agaaaataaattaattgaatataatcacatgtgtcggtgtcggaaacaaccacatgtccaacactagacatgcctt 46179876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 10893910 - 10893863
Alignment:
Q  209 agaaaatgaattaattgaatttaatcacatgtgttggtgtcggacacc 256  Q
    |||||||||  ||||||||| |||||||||||||||||||| ||||||    
T  10893910 agaaaatgacataattgaatgtaatcacatgtgttggtgtctgacacc 10893863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 2796564 - 2796598
Alignment:
Q  209 agaaaatgaattaattgaatttaatcacatgtgtt 243  Q
    |||||||||||||||||||||||||||||||||||    
T  2796564 agaaaatgaattaattgaatttaatcacatgtgtt 2796598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 13307888 - 13307957
Alignment:
Q  202 aatttttagaaaatgaattaattgaatttaatcacatgtgttggtgtcggacacccccacgtgtcagacac 272  Q
    |||||| |||||||||  ||||| ||| |||||||| |||||||||||||||| |  ||||||||||||||    
T  13307888 aattttgagaaaatgacataattcaatgtaatcacaagtgttggtgtcggaca-cgacacgtgtcagacac 13307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 20204714 - 20204669
Alignment:
Q  211 aaaatgaattaattgaatttaatcacatgtgt-tggtgtcggacac 255  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||    
T  20204714 aaaatgaattaattgaacgtaatcacatgtgtatggtgtcggacac 20204669  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 50699198 - 50699235
Alignment:
Q  219 ttaattgaatttaatcacatgtgttggtgtcggacacc 256  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  50699198 ttaattgaatgtaatcacatgtgttggtgttggacacc 50699235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 24821696 - 24821736
Alignment:
Q  214 atgaattaattgaatttaatcacatgtgttggtgtcggaca 254  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  24821696 atgaattaattgaatgtaatcacatgtgttggtgtctgaca 24821736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 4012740 - 4012779
Alignment:
Q  211 aaaatgaattaattgaatttaatcacatgtgttggtgtcg 250  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  4012740 aaaatgaattaattgaatataatcacatgtgtttgtgtcg 4012779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 32577505 - 32577472
Alignment:
Q  209 agaaaatgaattaattgaatttaatcacatgtgt 242  Q
    |||||||||||||||||||| |||||||||||||    
T  32577505 agaaaatgaattaattgaatgtaatcacatgtgt 32577472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 49636867 - 49636826
Alignment:
Q  209 agaaaatgaattaattgaatttaatcacatgtgttggtgtcg 250  Q
    |||||||||||||||||||| |||||||||| | ||||||||    
T  49636867 agaaaatgaattaattgaatgtaatcacatgcgctggtgtcg 49636826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 35198272 - 35198231
Alignment:
Q  209 agaaaatgaattaattgaatttaatcacatgtgttggtgtcg 250  Q
    |||||||||||||||||||| ||||||||||||  |||||||    
T  35198272 agaaaatgaattaattgaatgtaatcacatgtgacggtgtcg 35198231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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