View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15157_low_17 (Length: 264)
Name: NF15157_low_17
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15157_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 60 - 249
Target Start/End: Complemental strand, 18513063 - 18512874
Alignment:
| Q |
60 |
caaatgttgataaaattttcacctgtaattggttgtttttggttgaagaagttgaagatgcagcagaaggaatttctagtataactggatctatgggtga |
159 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18513063 |
caaatattgataaaatattcacctgtaattggttgtttttggttgaagaaggtgaagatgcagaagaaggaatttctagtataactggatctatcggtga |
18512964 |
T |
|
| Q |
160 |
gaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagcttgaggtcagtgtgacacaatatttaccaagggtggaagg |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18512963 |
gaagtagaagacttgaactgtgagagcaactaaagatgctagcaccaagcttgaggtcagtgtgacacaatatttaccaagggtggaagg |
18512874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 54 - 216
Target Start/End: Complemental strand, 18486720 - 18486558
Alignment:
| Q |
54 |
atgtaacaaatgttgataaaattttcacctgtaattggttgtttttggttgaagaagttgaagatgcagcagaaggaatttctagtataactggatctat |
153 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18486720 |
atgtgacaaatattgataaaatattcacctgtaattggttgtttttggttgaagaagttgaagatgcagcagaaggaatttctagtataactggatctat |
18486621 |
T |
|
| Q |
154 |
gggtgagaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagcttgaggt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18486620 |
gggtgagaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagcttgaggt |
18486558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 18506457 - 18506378
Alignment:
| Q |
142 |
aactggatctatgggtgagaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagcttgaggtcagtg |
221 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
18506457 |
aactggatctatgggtgaaaagtagaagacttgaactgtgagagcaactaaagctgctagtaccaagcttgaggttagtg |
18506378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 18506515 - 18506482
Alignment:
| Q |
75 |
ttttcacctgtaattggttgtttttggttgaaga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
18506515 |
ttttcacctgtaattggttgtttttggttgaaga |
18506482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University