View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15157_low_18 (Length: 259)
Name: NF15157_low_18
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15157_low_18 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 39490857 - 39491115
Alignment:
| Q |
1 |
atacttccttctagtcctcttcatttcaaggaaatgatggatgatttatacaaacgtttgtataatgtgaaatgggttttaggtgcttcattttttgaaa |
100 |
Q |
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| T |
39490857 |
atacttccttctagtcctcttcatttcaaggaaatgatggatgatttatacaaacgtttgaataatgtgaaatgggttttaggtgcttcattttttgaaa |
39490956 |
T |
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| Q |
101 |
ttgaagaagaaatagtgaaatcaatggatccattaactccaatttatcctattggaccattggtttcaccatttctattaggtgaaaaggaaacaagtaa |
200 |
Q |
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| T |
39490957 |
ttgaagaagaaatagtgaaatcaatggattcattaactccaatttatcctattggaccattggtttcaccttttctgttaggagaaaaggaaataagtaa |
39491056 |
T |
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| Q |
201 |
tgttagtgttgatatgtggaatgctgaagaggcatgcataggttggcttgataataaac |
259 |
Q |
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| T |
39491057 |
tgttagtgttgatatgtggaatgctgaagatgcatgcataggttggcttgataataaac |
39491115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 4 - 259
Target Start/End: Complemental strand, 39288175 - 39287920
Alignment:
| Q |
4 |
cttccttctagtcctcttcatttcaaggaaatgatggatgatttatacaaacgtttgtataatgtgaaatgggttttaggtgcttcattttttgaaattg |
103 |
Q |
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| T |
39288175 |
cttccttctagtcctcttcattataaagaacttatggcttattttatcaaagctttggataaagtggaatgggttttaggtgcttcatttttggaaattg |
39288076 |
T |
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| Q |
104 |
aagaagaaatagtgaaatcaatggatccattaactccaatttatcctattggaccattggtttcaccatttctattaggtgaaaaggaaacaagtaatgt |
203 |
Q |
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| T |
39288075 |
aagaagaaatagtgaaatcaatggattcattaactccaatttatcctattggaccattggtttcaccatttctattaggtgaaaaggaaacaagtaatgt |
39287976 |
T |
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| Q |
204 |
tagtgttgatatgtggaatgctgaagaggcatgcataggttggcttgataataaac |
259 |
Q |
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| T |
39287975 |
tagtgttgatatgtggaatgcagaagatgcatgcataggttggcttgataataaac |
39287920 |
T |
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