View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15157_low_19 (Length: 257)
Name: NF15157_low_19
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15157_low_19 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 1301557 - 1301804
Alignment:
| Q |
7 |
tcgaagaaaatatttcccaaagagaaaaaaggttagaaacctattatttaatgaaaaatactaacaaatgtttttaggacacttaaaaattctaaattaa |
106 |
Q |
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| T |
1301557 |
tcgaataaaatatttcccaaagagaaaagaggttagaaacctattatttaatggaaaatactaacaagtgtttttaggac-cttaaaaattctaaattaa |
1301655 |
T |
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| Q |
107 |
gagttctttaaaaagccaaatacttcaatttaaaatgtgctaaatatatatattttcttaaaaactttaccactcgttaaagagtaccctgtaaagaact |
206 |
Q |
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| T |
1301656 |
gagttctttaaaaagtcaaatacttcaatttaaaatgtgttgaatatagatattttcttaaaaactttaccactcgttaaagagta--ctctaaagaact |
1301753 |
T |
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| Q |
207 |
agttaacaatatctttatttaatttaaatatgcactccataaccaaattga |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1301754 |
cgttaacaatatctttatttaatttaaatatgcactccataaccaaattga |
1301804 |
T |
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