View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15157_low_2 (Length: 669)

Name: NF15157_low_2
Description: NF15157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15157_low_2
NF15157_low_2
[»] chr2 (6 HSPs)
chr2 (210-650)||(17109815-17110266)
chr2 (1-211)||(17110288-17110498)
chr2 (397-650)||(17030355-17030608)
chr2 (397-650)||(17048693-17048946)
chr2 (397-642)||(16978491-16978736)
chr2 (1-66)||(17126147-17126211)
[»] chr8 (1 HSPs)
chr8 (595-641)||(14313962-14314008)
[»] chr5 (1 HSPs)
chr5 (4-79)||(35052192-35052265)


Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 210 - 650
Target Start/End: Complemental strand, 17110266 - 17109815
Alignment:
Q  210 tcattttaaagtgggtccagttcaagtaaatactatttgaatataaatctgcaccacttgatatgagatataccaaaagaaaacatgtaaatagtaggta 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17110266 tcattttaaagtgggtccagttcaagtaaatactatttgaatataaatctgcaccacttgatatgagatataccaaaagaaaacatgtaaatagtaggta 17110167  T
Q  310 cctgagtaattgttgggcactatgactgttggtccctctcaggatcgtcaatcattatacattgaatatgcgcaatcct-----------ttccataagg 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||    
T  17110166 cctgagtaattgttgggcactatgactgttggtccctctcaggatcgtcaatcattatacattgaatatgcgcaatcctctcgcaatcctttccataagg 17110067  T
Q  399 tttcttgcatctttctaaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttggga 498  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17110066 tttcttgcatctttctaaaaggaatggacagttccccgaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttggga 17109967  T
Q  499 cagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggtaa 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17109966 cagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggtaa 17109867  T
Q  599 gagagagtggaatcaacccttgattgggaaaagactccacatctgtttcttg 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17109866 gagagagtggaatcaacccttgattgggaaaagactccacatctgtttcttg 17109815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 17110498 - 17110288
Alignment:
Q  1 tagtgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacacacgaagtttggtaactaattaagctcggccaattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17110498 tagtgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacacacgacgtttggtaactaattaagctcggccaattg 17110399  T
Q  101 tgtgtacgtctccaactgtattgatttatattattacccacttgggatttacagggtacaaatttgtatttaaacactgcatttcagattacaacataaa 200  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17110398 cgtgtacgtctccaactgtattgatttatattattacccacttaggatttacagggtacaaatttgtatttaaacactgcatttcagattacaacataaa 17110299  T
Q  201 tcccactgatc 211  Q
    |||||||||||    
T  17110298 tcccactgatc 17110288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 397 - 650
Target Start/End: Complemental strand, 17030608 - 17030355
Alignment:
Q  397 ggtttcttgcatctttctaaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgg 496  Q
    ||||||||||||| || |  ||| | || ||| |||||||| || |||| |||||| |||||| |||| ||||||||||| || || | ||  |||||||    
T  17030608 ggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggaagaccctcctttggcaagcattggatgttgg 17030509  T
Q  497 gacagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggt 596  Q
    |||| || || ||| | |||| |  ||||||||| ||||  || |||||||||||||||||||||||||||||| ||||||||  ||||||||||   ||    
T  17030508 gacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacggatatttagataagt 17030409  T
Q  597 aagagagagtggaatcaacccttgattgggaaaagactccacatctgtttcttg 650  Q
    ||||||||| |||| |||||||||||| ||||||||||||||||||| ||||||    
T  17030408 aagagagaggggaagcaacccttgattaggaaaagactccacatctgcttcttg 17030355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 397 - 650
Target Start/End: Complemental strand, 17048946 - 17048693
Alignment:
Q  397 ggtttcttgcatctttctaaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgg 496  Q
    ||||||||||||| || |  ||| | || ||| |||||||| || |||| |||||| |||||| |||| ||||||||||| || || | ||  |||||||    
T  17048946 ggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggaagaccctcctttggcaagcattggatgttgg 17048847  T
Q  497 gacagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggt 596  Q
    |||| || || ||| | |||| |  ||||||||| ||||  || |||||||||||||||||||||||||||||| ||||||||  ||||||||||   ||    
T  17048846 gacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacggatatttagataagt 17048747  T
Q  597 aagagagagtggaatcaacccttgattgggaaaagactccacatctgtttcttg 650  Q
    ||||||||| |||| |||||||||||| ||||||||||||||||||| ||||||    
T  17048746 aagagagaggggaagcaacccttgattaggaaaagactccacatctgcttcttg 17048693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 397 - 642
Target Start/End: Complemental strand, 16978736 - 16978491
Alignment:
Q  397 ggtttcttgcatctttctaaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgg 496  Q
    ||||||||||||| || |  ||| | || ||| |||||||| || |||| |||||| |||||| |||| ||||||||||| || || | ||  |||||||    
T  16978736 ggtttcttgcatcgttgtttaagcagtgaacaattccccaatatttgtagagttgaaatggatttaggcagaccctcctttggcaagcattggatgttgg 16978637  T
Q  497 gacagtttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggt 596  Q
    |||| || || ||| | |||| |  ||||||||| ||||  || |||||||||||||||||||||||||||||| ||||||||   |||||||||   ||    
T  16978636 gacaattatttagactcaatgttctaagagagggaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacaaatatttagataagt 16978537  T
Q  597 aagagagagtggaatcaacccttgattgggaaaagactccacatct 642  Q
    ||||||||  |||| |||||||||||| |||||| |||||||||||    
T  16978536 aagagagataggaagcaacccttgattaggaaaaaactccacatct 16978491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17126211 - 17126147
Alignment:
Q  1 tagtgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacaca 66  Q
    ||||||||||||| |||| ||||| ||||||| |||| ||   |||||||||||||||||||||||    
T  17126211 tagtgttagaacatcaaccctagttcaaaagagtaaaaattc-aaaaaacgcaaacaatgaacaca 17126147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 595 - 641
Target Start/End: Complemental strand, 14314008 - 14313962
Alignment:
Q  595 gtaagagagagtggaatcaacccttgattgggaaaagactccacatc 641  Q
    ||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  14314008 gtaagagagcgtggaagcaacccttgatcgggaaaagactccacatc 14313962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 35052265 - 35052192
Alignment:
Q  4 tgttagaacagcaactctagtccaaaagattaaagataggaaaaaacgcaaacaatgaacacacgaagtttggtaa 79  Q
    |||||||||||||| ||  || ||||||| |||||||| |||||| |||||||||||||||||||  |||||||||    
T  35052265 tgttagaacagcaa-tccggttcaaaagaataaagatacgaaaaa-cgcaaacaatgaacacacgttgtttggtaa 35052192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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